Factsheet for Os05t0397700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G259300.2	Wheat	plastid	81.0	82.67
Zm00001d038128_P004	Maize	plastid	79.89	82.63
TraesCS1A01G248600.1	Wheat	plastid	79.52	81.47
TraesCS1D01G248100.2	Wheat	plastid	79.7	81.36
HORVU1Hr1G062340.4	Barley	plastid	79.7	81.36
KXG21937	Sorghum	plastid	80.44	81.04
KRH38249	Soybean	cytosol	15.68	73.91
GSMUA_Achr3P07370_001	Banana	plasma membrane	64.21	68.77
KRH67197	Soybean	plastid	63.28	60.82
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	12.18	59.46
CDX84779	Canola	plastid	61.44	58.73
Bra022846.1-P	Field mustard	plastid	59.96	58.35
AT2G31530.1	Thale cress	plastid	61.62	58.09
CDY23936	Canola	plastid	61.44	58.01
VIT_07s0104g00040.t01	Wine grape	cytosol	63.47	56.12
Solyc09g065120.2.1	Tomato	cytosol, plastid	59.23	55.73
KRG95514	Soybean	plastid	33.58	50.42
CDX84169	Canola	plasma membrane	17.16	42.27
CDY62161	Canola	golgi, plastid, vacuole	10.52	40.71
CDX72502	Canola	cytosol, nucleus, plasma membrane	12.73	38.55
CDY68266	Canola	cytosol, nucleus	12.92	28.23
CDX92207	Canola	cytosol	11.62	28.0
Bra029080.1-P	Field mustard	mitochondrion	10.89	25.99
Bra039109.1-P	Field mustard	nucleus	13.65	25.87
CDY51931	Canola	cytosol, golgi, nucleus	11.07	23.35
Os08t0254500-02	Rice	plastid	23.43	22.84

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	EntrezGene:4338708	ProteinID:BAF17382.1	ProteinID:BAS93894.1	ProteinID:EEE63641.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150
GO:GO:0009526	GO:GO:0009536	GO:GO:0009658	GO:GO:0009987	GO:GO:0010027	GO:GO:0015031
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0072598	InterPro:IPR023201	EnsemblPlantsGene:Os05g0397700
EnsemblPlants:Os05t0397700-01	PFAM:PF00344	PRINTS:PR00303	PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	UniProt:Q0DIE1
SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0000E124B4	RefSeq:XP_015640048.1
RefSeq:XP_015640049.1	RefSeq:XP_015640050.1	SEG:seg	:	:	:

Description

SecY protein family protein. (Os05t0397700-01)

Coordinates

chr5:-:19346175..19353385

Molecular Weight (calculated)

59611.0 Da

IEP (calculated)

10.045

GRAVY (calculated)

0.240

Length

542 amino acids

Sequence
(BLAST)

001: MPHSLSLLLA PSRALSLSSP PLRLAPTHPP LRLHHDGGHL LVGTTRRQAP SPRRRRLHAA RASAPSAAAA SPVGPAGEGG EVGGRARKAA GYRNRFLDLA
101: RLGAVAESAA EALFRSEIRR RLAVTAVLIL LSRVGYFVPL PGFDRRLIPD SYLSFAPLPA DDLGDFSSEL KLSFFQLGIS HQISASIVMQ VLCHVLPSLE
201: KLRKEGLDGH EKIKGYIWWL SLGFALVAAF TVSCYSLQYS IYAASYRVKH VMITSLFLVL GAMTMTWICD TISESGFGHG SSLIICVGIL TGYTDTLHKM
301: LTQFSGNWYS CWPYILGIAG TFILVTMGAV LVTEGCRKIK LQYYGFKLAS GARSESSPVT EVEPYIPFNI NPTGMQPLLT TSYLLAFPSI MASIFGTQFW
401: ESLKETLNPK TSVGGGPWVY YLTYAFLVFV FNIFDIANLP KEISDYLNKM SARVPKIKPG RATVEYLTKI QTSTRFWGGI LLSLLATSSL LLDRYLRQIN
501: EGFSIGFTSV LIIVGSIIEL RRSYQAYNVM PALSKVLRRY GA

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.