Factsheet for Solyc09g065120.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67197	Soybean	plastid	67.01	68.44
GSMUA_Achr3P07370_001	Banana	plasma membrane	59.55	67.79
VIT_07s0104g00040.t01	Wine grape	cytosol	68.06	63.95
TraesCS1B01G259300.2	Wheat	plastid	56.94	61.77
HORVU1Hr1G062340.4	Barley	plastid	56.77	61.58
AT2G31530.1	Thale cress	plastid	61.46	61.57
Zm00001d038128_P004	Maize	plastid	55.9	61.45
TraesCS1A01G248600.1	Wheat	plastid	56.42	61.44
TraesCS1D01G248100.2	Wheat	plastid	56.6	61.39
CDX84779	Canola	plastid	60.42	61.38
Bra022846.1-P	Field mustard	plastid	59.2	61.22
CDY23936	Canola	plastid	60.76	60.98
KXG21937	Sorghum	plastid	55.38	59.29
Os05t0397700-01	Rice	plastid	55.73	59.23
KRG95514	Soybean	plastid	35.76	57.06
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	9.9	51.35
CDX84169	Canola	plasma membrane	17.36	45.45
CDY62161	Canola	golgi, plastid, vacuole	10.76	44.29
CDX72502	Canola	cytosol, nucleus, plasma membrane	11.63	37.43
CDX92207	Canola	cytosol	11.11	28.44
CDY68266	Canola	cytosol, nucleus	12.15	28.23
Bra039109.1-P	Field mustard	nucleus	13.02	26.22
Bra029080.1-P	Field mustard	mitochondrion	9.2	23.35
CDY51931	Canola	cytosol, golgi, nucleus	10.24	22.96
Solyc07g006520.2.1	Tomato	plastid	20.83	22.39

Protein Annotations

EnsemblPlants:Solyc09g065120.2.1	EnsemblPlantsGene:Solyc09g065120.2	Gene3D:1.10.3370.10	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf
PANTHER:PTHR10906	PANTHER:PTHR10906:SF2	PFAM:PF00344	PRINTS:PR00303	SEG:seg	SUPFAM:SSF103491
TMHMM:TMhelix	UniParc:UPI000276C50E	UniProt:K4CUD9	MapMan:23.1.4.2	:	:

Description

Preprotein translocase subunit SCY2, chloroplastic [Source:Projected from Arabidopsis thaliana (AT2G31530) UniProtKB/Swiss-Prot;Acc:F4IQV7]

Coordinates

chr9:-:62983754..62994405

Molecular Weight (calculated)

64272.5 Da

IEP (calculated)

9.454

GRAVY (calculated)

0.212

Length

576 amino acids

Sequence
(BLAST)

001: MEAAILCSYT PLSTTADLRI RGKFAGCNLH FYNLPLNRIH IPLKLKFSES SRRHFSSRKG LILSHGKKEL SSYFTHQLSS DYTSIRAASG ETLHYGQSSS
101: VSEDEGVSLT STDANECVSL QPKQKQFRNR FLNFVRLGSV VDNAAESFFK SEIRRRLFMT AILIVISRIG YFIPLPGFDR RLIPEDYLSF VSKSVDQLGD
201: STPELKLSLF QLGVSPQIAA SILMQVLCHV LPSLVKLRKE GLDGHEKIKG YIWWISLGFA ILEALILSCH SLPYSIYAAN HRVKHVFMTM SLLVSGAMTM
301: SWICDKITES GFGQGSTLII CVGILTGYTD TLQKMLTQIS ESSGNWWLYV LGVLGVFTVV TMWAVVVSEG CRKVKLQYYG FRVASGARED SLVPAVEPYI
401: PFNINPAGMQ PILVTSYLLA LPGILASLLG SRFWEHIRDA LNPDTSHGAD PWVYYTVYAF FVFLFNIFDI ANMPKEIADY LNKIGARIPS IKPGKATIAY
501: LTKIQASTRF WGGLLLSVLA TTSSILDHYL RRINEGYAIG LTSVLIIVGS IIELRRSYQA YNVMPSLSMA LKRYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.