CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84779	Canola	plastid	95.3	96.47
AT2G31530.1	Thale cress	plastid	89.02	88.87
KRH38249	Soybean	cytosol	17.07	85.22
CDY05267	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.76	71.17
GSMUA_Achr3P07370_001	Banana	plasma membrane	60.45	68.58
TraesCS1A01G248600.1	Wheat	plastid	59.41	64.46
TraesCS1D01G248100.2	Wheat	plastid	59.23	64.03
Zm00001d038128_P004	Maize	plastid	58.19	63.74
HORVU1Hr1G062340.4	Barley	plastid	58.88	63.65
TraesCS1B01G259300.2	Wheat	plastid	58.54	63.28
VIT_07s0104g00040.t01	Wine grape	cytosol	66.72	62.48
KXG21937	Sorghum	plastid	58.19	62.08
Os05t0397700-01	Rice	plastid	58.01	61.44
Solyc09g065120.2.1	Tomato	cytosol, plastid	60.98	60.76
CDY62161	Canola	golgi, plastid, vacuole	13.41	55.0
CDX84169	Canola	plasma membrane	21.08	55.0
CDX72502	Canola	cytosol, nucleus, plasma membrane	16.03	51.4
CDX92207	Canola	cytosol	13.94	35.56
CDY68266	Canola	cytosol, nucleus	14.63	33.87
CDY51931	Canola	cytosol, golgi, nucleus	14.98	33.46
CDY49314	Canola	plastid	22.47	23.41
CDY13013	Canola	plastid	22.3	23.27

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	GO:A0A078GEW3	UniProt:A0A078GEW3	EnsemblPlants:CDY23936	ProteinID:CDY23936
ProteinID:CDY23936.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00024439001	InterPro:IPR023201	PFAM:PF00344	PRINTS:PR00303	PANTHER:PTHR10906
PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0004EE47D4
SEG:seg	:	:	:	:	:

Description

BnaC03g17550DBnaC03g17550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEW3]

Coordinates

chrLK032152:-:40173..43534

Molecular Weight (calculated)

64217.5 Da

IEP (calculated)

9.602

GRAVY (calculated)

0.238

Length

574 amino acids

Sequence
(BLAST)

001: MNSSQACLFH SPLQPISLPQ PSYGFVSKRD PSLCYQPFRS RRCLATNLNI SRTRETCFIH LNRRHLSTKE RKSFSISYSD KRRNESIGSD EVLTDALDVE
101: IVPQNSVVSK TLQDNNNRPK SFRNRFLDFV RISSVLNTAA ERFFKSEIRR RLFVTAVLLV LSRVGYFIPL PGFDRRLIPQ DYLSFVSGSV EELGEFGAEI
201: KLSLFQLGLS PQIIASILMQ VLCHVLPSLV KLRKEGLDGH EKIKSYIWWL SFFFAIVEGI VVACTSLQYS VFAATAQVKH VMLTASLLVC GAMTMTWLCD
301: TISESGFGHG SSLIICVGIL TGYTETLHKM LNQISGSFTN WLPYLLGVLG IFTVVTMFAV VVTEGCRKIK LQYYGFKLAS ASSREGSPIT EVEPYIPFNI
401: NPAGMQPVLT TTYLLAFPSI LASILGSPFL LHVKEILNPE STVGAPPWVY YSIYAFFVFL FNIFDIANLP KEIADYLNKM GARIPNIKPG KATIEYLTKI
501: QASTRFWGGL LLSFLATSSS VLDHYLRSIN QGFSIGFTSV LIIASVGSII ELRRSYHAYN VMPSLSKALK RYGV

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.