CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67197	Soybean	plastid	85.04	54.43
GSMUA_Achr3P07370_001	Banana	plasma membrane	54.02	38.54
VIT_07s0104g00040.t01	Wine grape	cytosol	62.05	36.54
Solyc09g065120.2.1	Tomato	cytosol, plastid	57.06	35.76
TraesCS1A01G248600.1	Wheat	plastid	50.42	34.4
HORVU1Hr1G062340.4	Barley	plastid	50.42	34.27
TraesCS1B01G259300.2	Wheat	plastid	50.42	34.27
TraesCS1D01G248100.2	Wheat	plastid	50.14	34.09
Zm00001d038128_P004	Maize	plastid	49.03	33.78
Os05t0397700-01	Rice	plastid	50.42	33.58
KXG21937	Sorghum	plastid	48.2	32.34
KRH38249	Soybean	cytosol	8.03	25.22
KRH54991	Soybean	plastid	16.34	10.93
KRH63143	Soybean	endoplasmic reticulum	1.66	3.35

Protein Annotations

Gene3D:1.10.3370.10	MapMan:23.1.4.2	UniProt:A0A0R0EYD4	EMBL:ACUP02012113	EnsemblPlantsGene:GLYMA_19G155500	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	InterPro:IPR023201
EnsemblPlants:KRG95514	ProteinID:KRG95514	ProteinID:KRG95514.1	PFAM:PF00344	PRINTS:PR00303	PANTHER:PTHR10906
PANTHER:PTHR10906:SF2	SUPFAM:SSF103491	InterPro:SecY/SEC61-alpha	InterPro:SecY_dom_sf	TMHMM:TMhelix	UniParc:UPI0006EDFC16

Description

hypothetical protein

Coordinates

chr19:-:41569377..41574246

Molecular Weight (calculated)

40603.3 Da

IEP (calculated)

9.471

GRAVY (calculated)

0.099

Length

361 amino acids

Sequence
(BLAST)

001: MEATRFSPNH FYPHCFLTKP NALRERRYVK CINGVGTRVY LFTNPAFNNA PNRSLFPKLN RTLSVSFSDR LRDDYVRVDA PRSKEVVPAT RGGDGGEAIL
101: ASSPSADNSG TLQLKPLMFR NRFLNFARLG SVINGAAESF FKSEIRRRLF VTAVLIVISR VGYFIPLPGF DRRLIPEDYL SFVAGSSVDE LGDFTAELKL
201: SIFQLGISPQ IINRVHYCAV NLRKEGLDGH EKIKSYIWWM SFGFAILEAL IVACYSLPYS IYAATYRVKH VMVTSVLLVC GAMTITWICD TISESGFGQG
301: SSLIICVGIL TGYMETLYKM LTQLSEINDL HWVGSIIELR RSYQAYNVMP SLSNALRRYG V

Best Arabidopsis Sequence Match ( AT2G31530.1 )
(BLAST)

001: MNSSQACFFH FSLRPISLSH PSYAFLSKRD PFLCSQPRKC LTTNLNMSRT RQGHSIQMNR RHLLMKERKS FSINYSDKFR DDSMSSEEMH TDALDVEIIP
101: PDSQDIRNSQ NSAVSNTLQD DRPKSFRNRF LDFVRISSVL NTAAERFFKS EIRRRLFVTA VLLVLSRVGY FIPLPGFDRR LIPQDYLSFV SGSVEELGEF
201: GAEIKLSLFQ LGLSPQIIAS IIMQVLCHVL PSLVKLRKEG LDGHEKIKSY IWWLSFFFAI VEALVVAYTS LQYSVFAATA QVKHVMMTSS LLVCGAMTMT
301: WLCDTISESG FGHGSSLIIC VGILTGYTET LHKMLNQISG SFSNWLPYLL GLLGIFTVVT MFAVVVTEGC RKIKLQYYGF KLASASREGS PITEVEPYIP
401: FNINPAGMQP VLTTTYLLAF PSILASILGS PFLLNMKEIL NPESTVGAPP WVYYSIYAFF VFLFNIFDIA NLPKEIADYL NKMGARIPNI KPGKATIEYL
501: TKIQASTRFW GGLLLSFLAT ASTVLDHYLR SINQGFSIGF TSVLIIVGSI IELRRSYHAY NVMPSLSKAL KRYGV

Arabidopsis Description

SCY2Preprotein translocase subunit SCY2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IQV7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.