Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G205800.2 | Wheat | nucleus | 96.56 | 96.01 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 96.28 | 95.73 |
| HORVU6Hr1G036810.5 | Barley | nucleus | 92.55 | 89.97 |
| Zm00001d016410_P006 | Maize | nucleus | 65.62 | 69.6 |
| KXG29764 | Sorghum | nucleus | 65.62 | 69.6 |
| Zm00001d053613_P001 | Maize | nucleus | 64.76 | 69.33 |
| VIT_11s0016g04610.t01 | Wine grape | nucleus | 38.11 | 38.33 |
| GSMUA_Achr7P08450_001 | Banana | nucleus | 39.54 | 38.12 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, peroxisome | 40.69 | 36.04 |
| KRH56658 | Soybean | nucleus | 35.53 | 33.97 |
| CDX70900 | Canola | nucleus | 30.95 | 33.44 |
| KRH03775 | Soybean | nucleus | 34.96 | 33.42 |
| AT5G19960.1 | Thale cress | cytosol | 32.09 | 33.23 |
| Bra020076.1-P | Field mustard | nucleus | 30.37 | 32.82 |
| CDY42320 | Canola | nucleus | 29.8 | 32.2 |
| CDY44955 | Canola | nucleus | 29.51 | 31.89 |
| Bra006526.1-P | Field mustard | nucleus | 28.08 | 22.32 |
| CDX88867 | Canola | nucleus | 27.22 | 21.89 |
| TraesCS5A01G488700.1 | Wheat | nucleus | 13.47 | 11.66 |
| TraesCS2A01G143700.1 | Wheat | nucleus | 14.04 | 11.21 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G178400.1 | EnsemblPlantsGene:TraesCS6A01G178400 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | ncoils:Coil |
| PANTHER:PTHR15241 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd00590 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:200189260..200193754
Molecular Weight (calculated)
40798.6 Da
IEP (calculated)
5.420
GRAVY (calculated)
-1.451
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNEETSVY VGGLPYDADE DMLRSYFGPC GTIVSVKVIN DQRIRGKCYG FVTYTQHRAA QRAILEMDGK QIGNRAVRVN EVRTRGNTRD FGRDGFRRDP
101: VRDGRDVYWD RRDRERSYDR HRDRDPYHDR DSDRPRDHDR DRYDERGGFD HEMDYSMDRD HEGDERRARD LYRGDHDRPV ETRMDSDNDR DKENSKGYDS
201: ERDKEDKEQP PRKSRPKGRE SRDISSSSDE LRNDAKHQLD KAIQMHEDLE NEVSQIRDKV TSKDHHIADL QKKSQKLEDE LAAARKVSSE RQLTVTKLYK
301: SFLQLQDYND RAKTAEEDLK ALVDSAMAEV DMAEDATTKD GSGYENGMA
101: VRDGRDVYWD RRDRERSYDR HRDRDPYHDR DSDRPRDHDR DRYDERGGFD HEMDYSMDRD HEGDERRARD LYRGDHDRPV ETRMDSDNDR DKENSKGYDS
201: ERDKEDKEQP PRKSRPKGRE SRDISSSSDE LRNDAKHQLD KAIQMHEDLE NEVSQIRDKV TSKDHHIADL QKKSQKLEDE LAAARKVSSE RQLTVTKLYK
301: SFLQLQDYND RAKTAEEDLK ALVDSAMAEV DMAEDATTKD GSGYENGMA
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Arabidopsis Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.