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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX70900 Canola nucleus 58.75 61.3
CDY42320 Canola nucleus 54.3 56.66
CDY44955 Canola nucleus 54.01 56.35
Bra020076.1-P Field mustard nucleus 53.41 55.73
CDX88867 Canola nucleus 47.77 37.1
Bra006526.1-P Field mustard nucleus 48.07 36.9
GSMUA_Achr7P08450_001 Banana nucleus 38.87 36.19
KRH56658 Soybean nucleus 38.87 35.89
VIT_11s0016g04610.t01 Wine grape nucleus 36.5 35.45
KXG29764 Sorghum nucleus 33.83 34.65
Zm00001d016410_P006 Maize nucleus 33.53 34.35
KRH03775 Soybean nucleus 36.5 33.7
Zm00001d053613_P001 Maize nucleus 31.75 32.82
TraesCS6B01G205800.2 Wheat nucleus 33.53 32.19
TraesCS6D01G166200.2 Wheat nucleus 33.53 32.19
TraesCS6A01G178400.1 Wheat nucleus 33.23 32.09
GSMUA_Achr10P... Banana cytosol, nucleus, peroxisome 37.39 31.98
HORVU6Hr1G036810.5 Barley nucleus 31.75 29.8
AT3G47120.1 Thale cress nucleus 14.84 14.2
Protein Annotations
Gene3D:3.30.70.330MapMan:35.2EntrezGene:832118ProteinID:AED92774.1ArrayExpress:AT5G19960EnsemblPlantsGene:AT5G19960
RefSeq:AT5G19960TAIR:AT5G19960RefSeq:AT5G19960-TAIR-GEnsemblPlants:AT5G19960.1TAIR:AT5G19960.1EMBL:AY093121
Unigene:At.31237EMBL:BT003382ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488GO:GO:0008150InterPro:IPR000504InterPro:IPR012677RefSeq:NP_568388.1InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PFscan:PS50102PANTHER:PTHR15241UniProt:Q8RWF8InterPro:RBD_domain_sf
InterPro:RRM_domSMART:SM00360SUPFAM:SSF54928UniParc:UPI000000BFE7SEG:seg:
Description
Glycine-rich RNA-binding protein, putative [Source:UniProtKB/TrEMBL;Acc:Q8RWF8]
Coordinates
chr5:+:6743878..6746381
Molecular Weight (calculated)
38680.8 Da
IEP (calculated)
6.687
GRAVY (calculated)
-1.164
Length
337 amino acids
Sequence
(BLAST)
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG
101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS
201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR
301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.