Factsheet for AT3G47120.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085883	Potato	mitochondrion	26.14	63.45
Bra018163.1-P	Field mustard	nucleus	50.0	60.07
CDX99063	Canola	nucleus	50.0	60.07
CDX86130	Canola	nucleus	50.0	58.67
EER93167	Sorghum	nucleus	48.01	56.71
Zm00001d034710_P003	Maize	nucleus	49.15	55.27
GSMUA_Achr10P...	Banana	nucleus	42.61	52.45
PGSC0003DMT400014369	Potato	nucleus	47.16	47.16
TraesCS5B01G502600.1	Wheat	cytosol	40.34	46.1
Os03t0826400-01	Rice	nucleus	39.77	44.87
Solyc03g119430.2.1	Tomato	nucleus	46.88	43.65
TraesCS5D01G503700.1	Wheat	nucleus	48.58	42.33
TraesCS5A01G488700.1	Wheat	nucleus	48.3	42.18
KRH72666	Soybean	nucleus	49.43	39.37
VIT_06s0004g06440.t01	Wine grape	nucleus	47.73	39.16
TraesCS2D01G147300.1	Wheat	nucleus	48.58	39.13
TraesCS2B01G168700.1	Wheat	nucleus	48.3	38.9
KRH17025	Soybean	nucleus	48.01	38.76
HORVU5Hr1G115170.1	Barley	nucleus, plastid	48.86	38.74
TraesCS2A01G143700.1	Wheat	nucleus	48.01	38.67
AT5G19960.1	Thale cress	cytosol	14.2	14.84

Protein Annotations

Gene3D:1.10.150.840	Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	EntrezGene:823865	ProteinID:AEE78245.1
ArrayExpress:AT3G47120	EnsemblPlantsGene:AT3G47120	RefSeq:AT3G47120	TAIR:AT3G47120	RefSeq:AT3G47120-TAIR-G	EnsemblPlants:AT3G47120.1
TAIR:AT3G47120.1	EMBL:BT002472	EMBL:BT010369	ProteinID:CAB61958.1	ncoils:Coil	GO:GO:0000384
GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005686	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	GO:GO:0046872	GO:GO:0070274	GO:GO:0071011
GO:GO:0071013	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	RefSeq:NP_190296.1	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	UniProt:Q9SD61	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI00000ABF3D	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]

Coordinates

chr3:-:17350961..17352838

Molecular Weight (calculated)

40686.5 Da

IEP (calculated)

8.449

GRAVY (calculated)

-1.462

Length

352 amino acids

Sequence
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.