Factsheet for VIT_06s0004g06440.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085883	Potato	mitochondrion	24.71	73.1
GSMUA_Achr10P...	Banana	nucleus	38.69	58.04
CDX86130	Canola	nucleus	36.83	52.67
Bra018163.1-P	Field mustard	nucleus	35.9	52.56
CDX99063	Canola	nucleus	35.9	52.56
EER93167	Sorghum	nucleus	36.36	52.35
Zm00001d034710_P003	Maize	nucleus	37.06	50.8
PGSC0003DMT400014369	Potato	nucleus	40.79	49.72
Os03t0826400-01	Rice	nucleus	36.13	49.68
TraesCS5B01G502600.1	Wheat	cytosol	35.43	49.35
AT3G47120.1	Thale cress	nucleus	39.16	47.73
Solyc03g119430.2.1	Tomato	nucleus	41.03	46.56
TraesCS5D01G503700.1	Wheat	nucleus	39.16	41.58
KRH72666	Soybean	nucleus	42.66	41.4
KRH17025	Soybean	nucleus	41.72	41.05
TraesCS5A01G488700.1	Wheat	nucleus	38.46	40.94
HORVU5Hr1G115170.1	Barley	nucleus, plastid	39.86	38.51
TraesCS2A01G143700.1	Wheat	nucleus	39.16	38.44
TraesCS2B01G168700.1	Wheat	nucleus	38.93	38.22
TraesCS2D01G147300.1	Wheat	nucleus	38.93	38.22
VIT_11s0016g04610.t01	Wine grape	nucleus	11.89	14.7

Protein Annotations

Gene3D:1.10.150.840	EntrezGene:100246760	wikigene:100246760	Gene3D:3.30.70.330	MapMan:35.1	EMBL:AM471738
ProteinID:CAN72715	ProteinID:CAN72715.1	ProteinID:CCB43483	ProteinID:CCB43483.1	ncoils:Coil	UniProt:F6GUS5
EMBL:FN594951	GO:GO:0000166	GO:GO:0000384	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005686	GO:GO:0006139
GO:GO:0006406	GO:GO:0006464	GO:GO:0006468	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016607	GO:GO:0016740	GO:GO:0019538	GO:GO:0046872
GO:GO:0070274	GO:GO:0071011	GO:GO:0071013	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
EntrezGene:LOC100246760	wikigene:LOC100246760	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102
PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356
SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI00015C7B17	ArrayExpress:VIT_06s0004g06440	EnsemblPlantsGene:VIT_06s0004g06440
EnsemblPlants:VIT_06s0004g06440.t01	unigene:Vvi.14321	RefSeq:XP_002279321	RefSeq:XP_002279321.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:7171150..7175802

Molecular Weight (calculated)

50277.9 Da

IEP (calculated)

8.483

GRAVY (calculated)

-1.779

Length

429 amino acids

Sequence
(BLAST)

001: MNPLTLVKRI QKINSQEAAL GISESASWHA KYKESAYVFV GGIPFDLTEG DLLAVFSQYG EIVDVNLVRD KGTGKSKGFA FVAYEDQRST NLAVDNLNGA
101: QILGRIIRVD HVSNYKKKEE EDEETERQKR EARGVCRAFQ RGECNRGAGC KFSHDEQRAS NTGWGSEDKS SRWGHDKFQG STKSDGRPNS IPTNRVHEPT
201: VGEGHRFGNK DARSSRTKGS EGGRESHHRR SELDIRDQDG RGLERQMEQK EKELNYKEDQ DRRTTERRSG RPDSNPGEDH DRRGEDQDIR ATERRSRRHD
301: SNPSEDHDRR GEDQDIRATE RRSRRHDFES NPREDDRKEE DRDRRATERR SRRSEFESNP REDHDRREEK RSRRHELESK PKEDHDRREE KQSRRHESES
401: YLREDPRDER GDKRSGHSRD TASHRHRER

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.