Factsheet for Solyc03g119430.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014369	Potato	nucleus	87.3	93.75
Bra018163.1-P	Field mustard	nucleus	41.27	53.24
GSMUA_Achr10P...	Banana	nucleus	39.95	52.8
CDX99063	Canola	nucleus	40.74	52.56
CDX86130	Canola	nucleus	40.48	51.0
EER93167	Sorghum	nucleus	39.95	50.67
Zm00001d034710_P003	Maize	nucleus	41.01	49.52
Os03t0826400-01	Rice	nucleus	39.95	48.4
TraesCS5B01G502600.1	Wheat	cytosol	39.42	48.38
AT3G47120.1	Thale cress	nucleus	43.65	46.88
KRH17025	Soybean	nucleus	49.21	42.66
KRH72666	Soybean	nucleus	49.47	42.31
VIT_06s0004g06440.t01	Wine grape	nucleus	46.56	41.03
TraesCS5A01G488700.1	Wheat	nucleus	43.39	40.69
TraesCS5D01G503700.1	Wheat	nucleus	43.39	40.59
TraesCS2A01G143700.1	Wheat	nucleus	42.59	36.84
TraesCS2B01G168700.1	Wheat	nucleus	42.59	36.84
HORVU5Hr1G115170.1	Barley	nucleus, plastid	42.86	36.49
TraesCS2D01G147300.1	Wheat	nucleus	42.06	36.38

Protein Annotations

Gene3D:1.10.150.840	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0000384	GO:GO:0000398	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005686	GO:GO:0006139	GO:GO:0006406
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	GO:GO:0046872
GO:GO:0070274	GO:GO:0071011	GO:GO:0071013	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:K4BM92	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF90229	EnsemblPlantsGene:Solyc03g119430.2	EnsemblPlants:Solyc03g119430.2.1	UniParc:UPI00027665CE	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:68042896..68045989

Molecular Weight (calculated)

44528.3 Da

IEP (calculated)

9.782

GRAVY (calculated)

-1.479

Length

378 amino acids

Sequence
(BLAST)

001: MLLQLLFRPN TKSRRITGLR NWNIAMNPLT LVKRIQNINA KEASLGISDQ ASWHARYKDS AYVFVGGIPF DLTEGDLLAV FAQYGEVVDV NLVRDKGTGK
101: SKGFAFVAYE DQRSTNLAVD NLNGAQILGR IIRVDHVTNY KKKEEEDEET ERKKREERGV CRSFQRGECN RGAACKFSHD EKRAANTGWG AEEDRSLRWA
201: HDKAEDSKKD GRSGQWGRPP RPDYKEEVKV SDKDPRNSKA KITDVERHEQ RDSTARDHYK RDSTARDHYK RDVEQHRSER KEKGSNYKED DLDRSHVERR
301: SRRYDDVQDS GEAIGRKSRR HDDVISKEYD DRKDERRQKR YESESYHTEK RESREMEKRS RLHRDGRDEE DRRQRSHR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.