Factsheet for TraesCS5A01G488700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G503700.1	Wheat	nucleus	91.81	91.58
TraesCS2A01G143700.1	Wheat	nucleus	89.33	82.38
HORVU5Hr1G115170.1	Barley	nucleus, plastid	90.32	81.98
EER93167	Sorghum	nucleus	53.35	72.15
Os03t0826400-01	Rice	nucleus	52.61	67.95
Zm00001d034710_P003	Maize	nucleus	52.61	67.73
PGSC0003DMT400085883	Potato	mitochondrion	23.82	66.21
CDX86130	Canola	nucleus	40.94	55.0
GSMUA_Achr10P...	Banana	nucleus	38.96	54.9
CDX99063	Canola	nucleus	38.46	52.9
Bra018163.1-P	Field mustard	nucleus	38.46	52.9
AT3G47120.1	Thale cress	nucleus	42.18	48.3
PGSC0003DMT400014369	Potato	nucleus	39.95	45.74
Solyc03g119430.2.1	Tomato	nucleus	40.69	43.39
KRH17025	Soybean	nucleus	42.43	39.22
VIT_06s0004g06440.t01	Wine grape	nucleus	40.94	38.46
KRH72666	Soybean	nucleus	41.94	38.24
TraesCS6A01G178400.1	Wheat	nucleus	11.66	13.47

Protein Annotations

Gene3D:1.10.150.840	Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	PFAM:PF15663	PFscan:PS50102	PFscan:PS50103
PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360
SUPFAM:SSF54928	SUPFAM:SSF90229	EnsemblPlantsGene:TraesCS5A01G488700	EnsemblPlants:TraesCS5A01G488700.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
TIGR:cd12411	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:658670460..658673462

Molecular Weight (calculated)

46811.3 Da

IEP (calculated)

9.086

GRAVY (calculated)

-1.608

Length

403 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLAVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGI CYAFQKGECS
201: RGDSCRFSHD EQVAVQGRGV CYAFQKGECS RGASCRFSHD EQSVADMSFR RTFPHCQRGM HQNPPKSHKN FPDRNKEETR SGDRDGQSSR SELHRDRDSR
301: SRHGDRDTKD SDRNRHEKSP ERSRGDRQRG DDRGREDRSD TKDRDRNRHE KSPERSRGDR QRGDDRGRED RSESRRSRHD RDSGRRHERR GDEEEERYRK
401: SRR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.