Factsheet for HORVU5Hr1G115170.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G503700.1	Wheat	nucleus	83.56	91.83
TraesCS5A01G488700.1	Wheat	nucleus	81.98	90.32
TraesCS2A01G143700.1	Wheat	nucleus	85.14	86.5
TraesCS2D01G147300.1	Wheat	nucleus	84.46	85.81
TraesCS2B01G168700.1	Wheat	nucleus	84.46	85.81
TraesCS5B01G502600.1	Wheat	cytosol	53.15	76.62
EER93167	Sorghum	nucleus	48.87	72.82
Os03t0826400-01	Rice	nucleus	48.2	68.59
Zm00001d034710_P003	Maize	nucleus	47.97	68.05
PGSC0003DMT400085883	Potato	mitochondrion	21.85	66.9
GSMUA_Achr10P...	Banana	nucleus	35.81	55.59
CDX86130	Canola	nucleus	37.39	55.33
Bra018163.1-P	Field mustard	nucleus	34.91	52.9
CDX99063	Canola	nucleus	34.91	52.9
AT3G47120.1	Thale cress	nucleus	38.74	48.86
PGSC0003DMT400014369	Potato	nucleus	36.49	46.02
Solyc03g119430.2.1	Tomato	nucleus	36.49	42.86
VIT_06s0004g06440.t01	Wine grape	nucleus	38.51	39.86
KRH17025	Soybean	nucleus	38.51	39.22
KRH72666	Soybean	nucleus	38.29	38.46
HORVU6Hr1G036810.5	Barley	nucleus	11.94	14.76

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	UniProt:A0A287SU61	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0016607	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G115170	EnsemblPlants:HORVU5Hr1G115170.1
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642
PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI000B48177D	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:645843046..645850270

Molecular Weight (calculated)

50652.6 Da

IEP (calculated)

9.515

GRAVY (calculated)

-1.590

Length

444 amino acids

Sequence
(BLAST)

001: KIPTSPQISQ SPSSPPPHSR KSARIRTSTA GSLGGGGPGK MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG
101: EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLAVDNLNGA KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA
201: NTGWGSKEDD PKWEHDRHRG PQNKGESRGV CYAFQKGECS RGDSCRFSHD EQVAAQGRGV CYAFQKGECS RGASCRFSHD EQRNANTDRG SREDTNARRQ
301: YDHDPPKSHK NFPDRNKEEA RSGDRDGHSS RSELYRDRDS RSRHGDRDAK DSDRDRHEKS PERSRGDRQR GDNRGRQDRS DTKDRDRNGH EKSPERSRGD
401: RQRGDDRGRE DRPESKRSRQ DRDSGGRHER RVDEEEERYR KSRR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.