Factsheet for TraesCS5B01G502600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085883	Potato	mitochondrion	30.19	64.14
EER93167	Sorghum	nucleus	53.25	55.03
TraesCS2B01G168700.1	Wheat	nucleus	76.62	54.0
HORVU5Hr1G115170.1	Barley	nucleus, plastid	76.62	53.15
GSMUA_Achr10P...	Banana	nucleus	48.7	52.45
Zm00001d034710_P003	Maize	nucleus	52.92	52.08
Os03t0826400-01	Rice	nucleus	51.95	51.28
Bra018163.1-P	Field mustard	nucleus	43.51	45.73
CDX99063	Canola	nucleus	43.51	45.73
CDX86130	Canola	nucleus	43.18	44.33
PGSC0003DMT400014369	Potato	nucleus	48.05	42.05
AT3G47120.1	Thale cress	nucleus	46.1	40.34
Solyc03g119430.2.1	Tomato	nucleus	48.38	39.42
KRH17025	Soybean	nucleus	50.65	35.78
VIT_06s0004g06440.t01	Wine grape	nucleus	49.35	35.43
KRH72666	Soybean	nucleus	50.65	35.29
TraesCS6B01G205800.2	Wheat	nucleus	16.88	14.81

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
EnsemblPlantsGene:TraesCS5B01G502600	EnsemblPlants:TraesCS5B01G502600.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12411	SEG:seg

Description

No Description!

Coordinates

chr5B:+:669670244..669672960

Molecular Weight (calculated)

34960.6 Da

IEP (calculated)

8.471

GRAVY (calculated)

-1.144

Length

308 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGLA FVAYEDQRCT VLAVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE KDEKELQKKR EERGVCYAFQ KGECNRGNAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGI CYAFQKGECS
201: QGDSCRFSHD EQRNANTDRG SREDSNARRQ HDHDPPKSHK NFADRNKEEA RSGGFLKIRV VQGPRFQVRD MVMETQNIVT GPGTRNPPRD QEATDREAMT
301: GEEKKDRT

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.