Factsheet for PGSC0003DMT400085883

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	67.59	34.27
EER93167	Sorghum	nucleus	67.59	32.89
PGSC0003DMT400014369	Potato	nucleus	77.93	32.1
Os03t0826400-01	Rice	nucleus	66.9	31.09
Zm00001d034710_P003	Maize	nucleus	66.21	30.67
TraesCS5B01G502600.1	Wheat	cytosol	64.14	30.19
CDX99063	Canola	nucleus	60.0	29.69
Bra018163.1-P	Field mustard	nucleus	60.0	29.69
CDX86130	Canola	nucleus	60.69	29.33
AT3G47120.1	Thale cress	nucleus	63.45	26.14
VIT_06s0004g06440.t01	Wine grape	nucleus	73.1	24.71
KRH17025	Soybean	nucleus	72.41	24.08
TraesCS5A01G488700.1	Wheat	nucleus	66.21	23.82
TraesCS5D01G503700.1	Wheat	nucleus	66.21	23.76
KRH72666	Soybean	nucleus	72.41	23.76
TraesCS2B01G168700.1	Wheat	nucleus	67.59	22.43
TraesCS2D01G147300.1	Wheat	nucleus	66.21	21.97
HORVU5Hr1G115170.1	Barley	nucleus, plastid	66.9	21.85
TraesCS2A01G143700.1	Wheat	nucleus	65.52	21.74

Protein Annotations

EntrezGene:107062933	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1DAH4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400035454	PGSC:PGSC0003DMG400035454	EnsemblPlants:PGSC0003DMT400085883	PFscan:PS50102	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000296E745	RefSeq:XP_015169694.1
SEG:seg	:	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 42 [Source:PGSC_GENE;Acc:PGSC0003DMG400035454]

Coordinates

chr4:+:61533602..61534291

Molecular Weight (calculated)

16672.8 Da

IEP (calculated)

7.406

GRAVY (calculated)

-0.450

Length

145 amino acids

Sequence
(BLAST)

001: MNPLRRIQNI NAKEASLGIS YYQASWHTRY KDSPYVFVGG IPFDLTECDL LAVFSQYGEV VDVNLVRDKG TGKSKCFGLV AYDDQRSTNL AVENLNGAQI
101: LGRIIRVDHV TNYKKKEEED EETEWKKVLR ASSLTMRRFV LQVYE

Best Arabidopsis Sequence Match ( AT3G47120.2 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE
201: EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR
301: RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.