Factsheet for PGSC0003DMT400014369

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g119430.2.1	Tomato	nucleus	93.75	87.3
PGSC0003DMT400085883	Potato	mitochondrion	32.1	77.93
Bra018163.1-P	Field mustard	nucleus	44.03	52.9
GSMUA_Achr10P...	Banana	nucleus	42.9	52.8
CDX99063	Canola	nucleus	43.47	52.22
EER93167	Sorghum	nucleus	43.18	51.01
CDX86130	Canola	nucleus	42.61	50.0
Zm00001d034710_P003	Maize	nucleus	44.03	49.52
Os03t0826400-01	Rice	nucleus	43.18	48.72
TraesCS5B01G502600.1	Wheat	cytosol	42.05	48.05
AT3G47120.1	Thale cress	nucleus	47.16	47.16
KRH17025	Soybean	nucleus	52.27	42.2
KRH72666	Soybean	nucleus	52.56	41.86
VIT_06s0004g06440.t01	Wine grape	nucleus	49.72	40.79
TraesCS5A01G488700.1	Wheat	nucleus	45.74	39.95
TraesCS5D01G503700.1	Wheat	nucleus	45.74	39.85
TraesCS2A01G143700.1	Wheat	nucleus	45.74	36.84
TraesCS2B01G168700.1	Wheat	nucleus	45.45	36.61
HORVU5Hr1G115170.1	Barley	nucleus, plastid	46.02	36.49
TraesCS2D01G147300.1	Wheat	nucleus	45.17	36.38

Protein Annotations

Gene3D:1.10.150.840	EntrezGene:102592972	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677
UniProt:M1A438	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00642	EnsemblPlantsGene:PGSC0003DMG400005636	PGSC:PGSC0003DMG400005636
EnsemblPlants:PGSC0003DMT400014369	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI0002968605
RefSeq:XP_006341603.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

Zinc finger CCCH domain-containing protein 42 [Source:PGSC_GENE;Acc:PGSC0003DMG400005636]

Coordinates

chr3:-:58853527..58856873

Molecular Weight (calculated)

41318.2 Da

IEP (calculated)

8.690

GRAVY (calculated)

-1.540

Length

352 amino acids

Sequence
(BLAST)

001: MNPLTLVKRI QNINAKEASL GISDQASWHA RYKDSAYVFV GGIPFDLTEG DLLAVFAQYG EVVDVNLVRE KGTGKSKGFA FVAYEDQRST NLAVDNLNGA
101: QILGRIIRVD HVTNYKKKEE EDEETERKKR EERGVCRSFQ RGECNRGAAC KFSHDEKRAA NTGWGAEEDR SSRWVHDKAE NSSKDGRSGQ WGRPPRPDYK
201: EEVKVSDTDP RNSKAKISDI ERHEQRDSTA RDHYKRDSTA RDHYKRDVEQ HRSEQKEKGS NYKEDDLDRS HVERRSRRYD DVQHSGEAIE RKSRRHDDVI
301: SKEYDDRRDE RGQKRYESES YHTEKRESRE MEKQSRLHRD GRDEDRRQRS HR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.