Factsheet for GSMUA_Achr10P22410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085883	Potato	mitochondrion	34.27	67.59
Bra018163.1-P	Field mustard	nucleus	52.8	51.54
EER93167	Sorghum	nucleus	53.5	51.34
CDX99063	Canola	nucleus	52.1	50.85
CDX86130	Canola	nucleus	52.45	50.0
Os03t0826400-01	Rice	nucleus	54.2	49.68
Zm00001d034710_P003	Maize	nucleus	53.5	48.88
TraesCS5B01G502600.1	Wheat	cytosol	52.45	48.7
PGSC0003DMT400014369	Potato	nucleus	52.8	42.9
AT3G47120.1	Thale cress	nucleus	52.45	42.61
Solyc03g119430.2.1	Tomato	nucleus	52.8	39.95
TraesCS5D01G503700.1	Wheat	nucleus	55.59	39.36
TraesCS5A01G488700.1	Wheat	nucleus	54.9	38.96
VIT_06s0004g06440.t01	Wine grape	nucleus	58.04	38.69
TraesCS2B01G168700.1	Wheat	nucleus	56.29	36.84
TraesCS2A01G143700.1	Wheat	nucleus	55.94	36.61
TraesCS2D01G147300.1	Wheat	nucleus	55.94	36.61
KRH17025	Soybean	nucleus	55.59	36.47
KRH72666	Soybean	nucleus	56.29	36.43
HORVU5Hr1G115170.1	Barley	nucleus, plastid	55.59	35.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	18.88	13.71
GSMUA_Achr7P08450_001	Banana	nucleus	16.08	12.71

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0016607	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G22410_001	EnsemblPlants:GSMUA_Achr10P22410_001	EnsemblPlants:GSMUA_Achr10T22410_001
InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	UniProt:M0RKG6	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229	UniParc:UPI0002965996
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

Zinc finger CCCH domain-containing protein 25 [Source:GMGC_GENE;Acc:GSMUA_Achr10G22410_001]

Coordinates

chr10:+:27619352..27622736

Molecular Weight (calculated)

32919.7 Da

IEP (calculated)

9.223

GRAVY (calculated)

-1.357

Length

286 amino acids

Sequence
(BLAST)

001: MNPLTLVKRT QKINSTEAAL GISEEASWHA KYKESAYIFI GGIPFDLTEG DLLAVFSQYG EVVDVNLVRD KSTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: KILGRIVRVD HVSNYKKKEE EDEEERQKKR EARGVCRAFQ RGECKFGDSC KFSHDEQRSA NTGWGPKDSD SRWNHDRYDG PPNSHKNASR HASDPTLHQR
201: VKEGDSKSGS VNKDSHPSRL KTYEDDDEYR ESRRDKPSDR RNLEANREDR LDKQGNDKRR RHDEESSSSR YRSREDRGSP SRVHRR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.