CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034710_P003	Maize	nucleus	88.25	84.03
PGSC0003DMT400085883	Potato	mitochondrion	32.89	67.59
Os03t0826400-01	Rice	nucleus	69.13	66.03
GSMUA_Achr10P...	Banana	nucleus	51.34	53.5
TraesCS5A01G488700.1	Wheat	nucleus	72.15	53.35
TraesCS5B01G502600.1	Wheat	cytosol	55.03	53.25
TraesCS5D01G503700.1	Wheat	nucleus	71.81	52.97
Bra018163.1-P	Field mustard	nucleus	51.01	51.88
CDX99063	Canola	nucleus	51.01	51.88
CDX86130	Canola	nucleus	52.01	51.67
HORVU5Hr1G115170.1	Barley	nucleus, plastid	72.82	48.87
TraesCS2B01G168700.1	Wheat	nucleus	71.14	48.51
TraesCS2D01G147300.1	Wheat	nucleus	71.14	48.51
TraesCS2A01G143700.1	Wheat	nucleus	70.81	48.28
AT3G47120.1	Thale cress	nucleus	56.71	48.01
PGSC0003DMT400014369	Potato	nucleus	51.01	43.18
Solyc03g119430.2.1	Tomato	nucleus	50.67	39.95
KRH17025	Soybean	nucleus	56.71	38.76
KRH72666	Soybean	nucleus	55.37	37.33
VIT_06s0004g06440.t01	Wine grape	nucleus	52.35	36.36
KXG29764	Sorghum	nucleus	15.77	14.29

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	EntrezGene:8079701	UniProt:C5WU44	EnsemblPlants:EER93167
ProteinID:EER93167	ProteinID:EER93167.1	GO:GO:0000384	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005686	GO:GO:0006139	GO:GO:0006406	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016607	GO:GO:0046872	GO:GO:0070274
GO:GO:0071011	GO:GO:0071013	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	EnsemblPlantsGene:SORBI_3001G029400	SUPFAM:SSF54928
SUPFAM:SSF90229	UniParc:UPI0001A82966	RefSeq:XP_002466169.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:2287542..2290693

Molecular Weight (calculated)

34638.7 Da

IEP (calculated)

8.901

GRAVY (calculated)

-1.447

Length

298 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEALL GIGEDASWHA KFKDSAYVYV GGVPFDLTEG DLLAIFAQYG EVVDVNLVRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: KVLGRIIRVD HVSKYKKKEE EDEEEQQKKR EARGVCYAFQ KGECNRGASC RYSHDEQRNA NTGWGSKEDS GARWEHDKHS DVPKSRGMCY AFQKGECNRG
201: ASCKFSHDEQ RNVNNRQSSR DGEPSRSERY GDRESRSRHD DRRAEDRDRY RRDNSPERLR GERQRNDDRS DRGREEKSER RKYDAEYDDR KRSRYGRE

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.