Factsheet for TraesCS2A01G143700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G147300.1	Wheat	nucleus	97.71	97.71
TraesCS2B01G168700.1	Wheat	nucleus	97.03	97.03
TraesCS5A01G488700.1	Wheat	nucleus	82.38	89.33
HORVU5Hr1G115170.1	Barley	nucleus, plastid	86.5	85.14
EER93167	Sorghum	nucleus	48.28	70.81
Os03t0826400-01	Rice	nucleus	48.28	67.63
Zm00001d034710_P003	Maize	nucleus	47.37	66.13
PGSC0003DMT400085883	Potato	mitochondrion	21.74	65.52
GSMUA_Achr10P...	Banana	nucleus	36.61	55.94
CDX86130	Canola	nucleus	37.07	54.0
CDX99063	Canola	nucleus	35.24	52.56
Bra018163.1-P	Field mustard	nucleus	35.24	52.56
AT3G47120.1	Thale cress	nucleus	38.67	48.01
PGSC0003DMT400014369	Potato	nucleus	36.84	45.74
Solyc03g119430.2.1	Tomato	nucleus	36.84	42.59
VIT_06s0004g06440.t01	Wine grape	nucleus	38.44	39.16
KRH17025	Soybean	nucleus	38.9	38.99
KRH72666	Soybean	nucleus	38.44	38.01
TraesCS6A01G178400.1	Wheat	nucleus	11.21	14.04

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	Gene3D:4.10.1000.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR000571	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF00642	PFscan:PS50102	PFscan:PS50103	PANTHER:PTHR23139	PANTHER:PTHR23139:SF34
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00356	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF90229
EnsemblPlantsGene:TraesCS2A01G143700	EnsemblPlants:TraesCS2A01G143700.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd12411	SEG:seg

Description

No Description!

Coordinates

chr2A:+:88661909..88671592

Molecular Weight (calculated)

50912.7 Da

IEP (calculated)

8.869

GRAVY (calculated)

-1.731

Length

437 amino acids

Sequence
(BLAST)

001: MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLSVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE EDDEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGV CYAFQKGECS
201: RGDTCRFSHD EQVAVQGRGV CYAFQKGECS RVASCRFSHD EQRNANTDRG SREDSNARRQ HDHDPPKSHK NFPDRTKEEA RSGDRDGQSS RSELYRDRDS
301: RTRYGDRDTK DRDRNMQEKS PERSRGDRQR GDDRGREDRS DTKDRDRNGH EKSPERSRGD RQRGDDRGRE DRSDVKDRDR NGYEKSPERP RGDRQRGDDR
401: RREDRSESKR SRHDRDSGVR YERRGDEEEE RYRKSRR

Best Arabidopsis Sequence Match ( AT3G47120.1 )
(BLAST)

001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR

Arabidopsis Description

Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.