Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G488700.1 | Wheat | nucleus | 91.58 | 91.81 |
| TraesCS2D01G147300.1 | Wheat | nucleus | 91.34 | 84.44 |
| HORVU5Hr1G115170.1 | Barley | nucleus, plastid | 91.83 | 83.56 |
| EER93167 | Sorghum | nucleus | 52.97 | 71.81 |
| Os03t0826400-01 | Rice | nucleus | 52.48 | 67.95 |
| Zm00001d034710_P003 | Maize | nucleus | 52.48 | 67.73 |
| PGSC0003DMT400085883 | Potato | mitochondrion | 23.76 | 66.21 |
| GSMUA_Achr10P... | Banana | nucleus | 39.36 | 55.59 |
| CDX86130 | Canola | nucleus | 40.59 | 54.67 |
| CDX99063 | Canola | nucleus | 38.12 | 52.56 |
| Bra018163.1-P | Field mustard | nucleus | 38.12 | 52.56 |
| AT3G47120.1 | Thale cress | nucleus | 42.33 | 48.58 |
| PGSC0003DMT400014369 | Potato | nucleus | 39.85 | 45.74 |
| Solyc03g119430.2.1 | Tomato | nucleus | 40.59 | 43.39 |
| KRH17025 | Soybean | nucleus | 42.57 | 39.45 |
| VIT_06s0004g06440.t01 | Wine grape | nucleus | 41.58 | 39.16 |
| KRH72666 | Soybean | nucleus | 42.08 | 38.46 |
| TraesCS6D01G166200.2 | Wheat | nucleus | 12.87 | 14.81 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | Gene3D:4.10.1000.10 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf |
| PFAM:PF00076 | PFAM:PF00642 | PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR23139 | PANTHER:PTHR23139:SF34 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00356 | SMART:SM00360 | SUPFAM:SSF54928 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS5D01G503700 | EnsemblPlants:TraesCS5D01G503700.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd12411 | SEG:seg |
Description
No Description!
Coordinates
chr5D:+:530424650..530428088
Molecular Weight (calculated)
46881.2 Da
IEP (calculated)
8.671
GRAVY (calculated)
-1.651
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPLTQVKRT QVINQKEAAL GLSEDASWHA KFRGSAYVFV GGVPFDLTEG DLLAVFAQYG EVVDVNLVRD KATGKSKGFA FVAYEDQRST VLAVDNLNGA
101: KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGI CYAFQKGECS
201: RGDSCRFSHD EQVAVQGRGV CYAFQKGECS RGASCRFSHD EQRNANTDRG SREDSSARRQ HDHDPPKRHK NFPDRNKEEA RSGDRDGQTS RSELCRDRDS
301: RSRHGDRDTK ESDRNRHEKS PERSRGDRQR GDDRGREERS DTRDRDRDRR EKSPERSRGD RQRGDDRGIE ERSESKRSRH DRDSGGRYER RSDEEEERYR
401: KSRR
101: KVLGRIIRVD HVEKYKKKEE EDEEELQKKR EERGVCYAFQ KGECNRGDAC KYSHDEQRNA NTGWGSKEDD PKWEHDRHRG PQNKGESRGI CYAFQKGECS
201: RGDSCRFSHD EQVAVQGRGV CYAFQKGECS RGASCRFSHD EQRNANTDRG SREDSSARRQ HDHDPPKRHK NFPDRNKEEA RSGDRDGQTS RSELCRDRDS
301: RSRHGDRDTK ESDRNRHEKS PERSRGDRQR GDDRGREERS DTRDRDRDRR EKSPERSRGD RQRGDDRGIE ERSESKRSRH DRDSGGRYER RSDEEEERYR
401: KSRR
001: MNPLTQVKNL QKINARESDL GISDEASWHA KYKNSAYVYV GGIPFDLTEG DLLAVFSQYG EIVDVNLIRD KGTGKSKGFA FLAYEDQRST ILAVDNLNGA
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR
101: LVLGRTIKVD HCGAYKKHEE EDEETRRQNR EARGVCRAFQ RGECTRGDSC KFSHDEKRAA NTGWGHEEDR SSKWDHDKNR EGRGVCRAFQ RGECTRGDSC
201: KFSHDEKRAA TTGWGHEEDR SSKWDQDKLN GAKKGGTSFG NRGDFKPDVE EKSYRGRGDG DASYGRPKER ERVDREDMGP RSRDAYDMKE QKRSGRYDNA
301: YSRRHNDEID YVREDKGSRA QDWEKRKAES RRDRNDREEK DRDSLRREDR RR
Arabidopsis Description
Zinc finger CCCH domain-containing protein 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SD61]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.