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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000891.1-P
Bra008559.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G16500.1 Bra000891.1-P AT4G02150.1 21798944
AT1G16500.1 Bra008559.1-P AT4G02150.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY68470 Canola cytosol, nucleus, plastid 80.82 80.82
CDY55881 Canola cytosol, nucleus, plastid 79.59 79.59
Bra026718.1-P Field mustard nucleus 67.76 68.59
AT1G16500.1 Thale cress cytosol 66.53 62.93
Bra035096.1-P Field mustard nucleus 53.88 56.65
VIT_19s0085g00030.t01 Wine grape cytosol 48.57 55.35
Solyc07g066570.2.1 Tomato cytosol 42.45 54.74
PGSC0003DMT400056874 Potato cytosol 42.86 47.73
KRH13717 Soybean nucleus 47.35 46.22
TraesCS2D01G459600.1 Wheat cytosol 33.88 37.22
Zm00001d002301_P001 Maize cytosol, nucleus, plastid 32.24 36.57
Os04t0617700-01 Rice cytosol, plasma membrane, plastid 8.98 36.07
TraesCS2B01G480800.1 Wheat cytosol 32.65 36.04
GSMUA_Achr7P03500_001 Banana cytosol 31.43 35.98
HORVU2Hr1G104270.1 Barley cytosol 25.71 35.59
TraesCS2A01G459300.1 Wheat cytosol 32.24 35.43
GSMUA_Achr1P25720_001 Banana cytosol 30.61 35.05
GSMUA_AchrUn_... Banana cytosol 29.8 34.93
TraesCS2B01G480900.1 Wheat cytosol 29.39 34.78
TraesCS2D01G459800.1 Wheat nucleus 31.02 34.39
TraesCS2D01G459700.1 Wheat cytosol 28.98 34.13
TraesCS2A01G459400.1 Wheat cytosol 29.39 33.96
TraesCS2B01G481300.1 Wheat cytosol 30.2 33.48
TraesCS2B01G481200.1 Wheat cytosol 30.2 33.48
TraesCS2A01G459500.1 Wheat cytosol 31.02 32.9
GSMUA_Achr9P30650_001 Banana cytosol 30.2 32.89
GSMUA_Achr11P... Banana cytosol 31.02 31.54
HORVU2Hr1G104300.1 Barley cytosol, nucleus 32.65 31.5
Zm00001d013614_P001 Maize cytosol 8.57 27.27
OQU82335 Sorghum plastid 31.43 27.02
Zm00001d013615_P001 Maize cytosol 24.9 26.64
HORVU0Hr1G005480.2 Barley cytosol 22.45 26.07
EER91121 Sorghum cytosol 24.9 25.31
Zm00001d033459_P001 Maize cytosol 23.27 25.11
TraesCS4D01G015300.1 Wheat cytosol 23.27 24.89
TraesCS4B01G017000.1 Wheat nucleus 22.04 24.22
TraesCS4A01G296700.1 Wheat nucleus 22.45 23.91
Os03t0660700-01 Rice nucleus 17.96 22.92
HORVU4Hr1G002540.1 Barley plastid 21.63 15.82
Protein Annotations
EnsemblPlants:Bra026046.1EnsemblPlants:Bra026046.1-PEnsemblPlantsGene:Bra026046PANTHER:PTHR33177PANTHER:PTHR33177:SF6SEG:seg
UniParc:UPI000253F208UniProt:M4EB87MapMan:35.2:::
Description
AT1G16500 (E=1e-069) | unknown protein
Coordinates
chrA06:+:6353388..6354375
Molecular Weight (calculated)
26336.1 Da
IEP (calculated)
8.942
GRAVY (calculated)
-0.451
Length
245 amino acids
Sequence
(BLAST)
001: MTADVSSLVR LLSRYNDDRT TVKDSAQQGS SVALMTRDLL GSGSCRGGEG GDQSLELDLD LKVPNGWEKR LDLKSGKVYL QQQNSTTSSH HRRAEQSNQT
101: FRKFQDLNFP SKSPVRPLLS LFDDTSLELK LVPSSSSSPA SSSSSSLCVS SASSSFQSVC TLDKVKSALE RAGKVSSGTL KKRKSPEEED VCDQTASTAG
201: SSPVAVGCPG CLSYVLVMKN NPKCPRCHSF VALPAVKRPK IDLNI
Best Arabidopsis Sequence Match ( AT1G16500.1 )
(BLAST)
001: MAADVSSLVR ILSRFKDDRT VVKDSTGPRS TVALMTRDLL GIGGCVGGGG GGDEQSLELD LDVQVPNGWE KRLDLKSGKV YLQQQCNSTS SSSSSHHHHH
101: HHEDQTNQTV PRFQDLNVPP ISDKFPAKPL LSLFDDDDDT SLELKLVPSS ISRPLPPPLS SFSPNQSLSY LSSVCTLDKV KLALERAEKD TKKRQSPEDD
201: GVYDGTASAT VAASQVAAGC PGCLSYVFVA KNNPKCPRCH SFVPLPAMKK PKIDLNISM
Arabidopsis Description
>F3O9.30 [Source:UniProtKB/TrEMBL;Acc:Q9SA48]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.