Factsheet for TraesCS4B01G017000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G172000.1
TraesCS3B01G202800.2
TraesCS3D01G178500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16500.1	TraesCS3A01G172000.1	AT4G02150.1	21798944
AT1G16500.1	TraesCS3B01G202800.2	AT4G02150.1	21798944
AT1G16500.1	TraesCS3D01G178500.1	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G296700.1	Wheat	nucleus	85.2	82.61
TraesCS4D01G015300.1	Wheat	cytosol	82.06	79.91
Zm00001d033459_P001	Maize	cytosol	59.19	58.15
Zm00001d013615_P001	Maize	cytosol	55.61	54.15
EER91121	Sorghum	cytosol	56.5	52.28
HORVU4Hr1G002540.1	Barley	plastid	71.75	47.76
Os03t0660700-01	Rice	nucleus	34.53	40.1
Zm00001d013614_P001	Maize	cytosol	12.56	36.36
GSMUA_Achr7P03500_001	Banana	cytosol	31.84	33.18
Solyc07g066570.2.1	Tomato	cytosol	28.25	33.16
GSMUA_AchrUn_...	Banana	cytosol	30.94	33.01
TraesCS2B01G480900.1	Wheat	cytosol	30.49	32.85
GSMUA_Achr1P25720_001	Banana	cytosol	31.39	32.71
GSMUA_Achr11P...	Banana	cytosol	34.53	31.95
TraesCS2B01G480800.1	Wheat	cytosol	31.39	31.53
TraesCS2B01G481300.1	Wheat	cytosol	30.94	31.22
TraesCS2B01G481200.1	Wheat	cytosol	30.94	31.22
PGSC0003DMT400056874	Potato	cytosol	30.04	30.45
VIT_10s0092g00640.t01	Wine grape	cytosol	29.6	30.0
GSMUA_Achr9P30650_001	Banana	cytosol	29.6	29.33
VIT_19s0085g00030.t01	Wine grape	cytosol	26.91	27.91
KRH13717	Soybean	nucleus	30.04	26.69
Bra035096.1-P	Field mustard	nucleus	27.8	26.61
CDY37016	Canola	nucleus	27.35	25.85
CDX88511	Canola	nucleus	27.35	25.85
CDX76373	Canola	nucleus	27.35	25.85
CDX79304	Canola	cytosol	25.56	25.22
AT1G79160.1	Thale cress	cytosol	26.01	24.27
Bra026718.1-P	Field mustard	nucleus	26.01	23.97
CDY55881	Canola	cytosol, nucleus, plastid	26.01	23.67
AT1G16500.1	Thale cress	cytosol	27.35	23.55
CDY51001	Canola	nucleus	25.56	23.36
CDY68470	Canola	cytosol, nucleus, plastid	25.11	22.86
CDX81765	Canola	cytosol	24.66	22.82
Bra026046.1-P	Field mustard	cytosol, nucleus, plastid	24.22	22.04

Protein Annotations

EnsemblPlants:TraesCS4B01G017000.1

EnsemblPlantsGene:TraesCS4B01G017000

PANTHER:PTHR33177

PANTHER:PTHR33177:SF7

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr4B:-:12142260..12143988

Molecular Weight (calculated)

22837.2 Da

IEP (calculated)

8.596

GRAVY (calculated)

-0.317

Length

223 amino acids

Sequence
(BLAST)

001: MVAEAVGFMM SRAADGGTIA PELVTRDFLG GCQAPAPAAD GPRHDAAALQ PGKPPLQKHR SPPPSARGDL NLFPASGAAM APLPTMAPAA DCAATTTYHS
101: VCTIEKVKTA LERFERGKQG QGHHHQQQQS GAGAGAGASP SSSSVTTSVK RRGDVAVEQG DGCDSPSASG GMVAAACPRC FLYVLIARSD PRCPRCESHV
201: PPPPAPAPKK KPRIDLNVGF LGT

Best Arabidopsis Sequence Match ( AT1G79160.1 )
(BLAST)

001: MILDMAADVS SLVRLLSGYK DDRAVVKDSA GAKSSAALMT RDLLGNGRGG GGDRSLELDL DLQVPTGYEK RLDLKSGKVY LQRCNSTSSS SITNADQTNQ
101: TVPTFQDLNF PPPTLNNSPL LNLFDDTTPE LKLLPSSRSS RPNTSNLQSV CTLDKVKSAL ERAERDPAMF KKRQSPDDTV YDHYRTEAVA SPVVAGCPGC
201: LSYVLVMMNN PKCPRCDTIV PLPTNPMKKK PKIDLNISI

Arabidopsis Description

Filamentous hemagglutinin transporter [Source:UniProtKB/TrEMBL;Acc:Q84JL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.