Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030908.1-P | Field mustard | nucleus | 99.52 | 99.76 |
| CDY61476 | Canola | nucleus | 99.29 | 99.52 |
| CDY51403 | Canola | nucleus | 96.19 | 96.19 |
| CDY33092 | Canola | nucleus | 96.19 | 95.06 |
| AT1G54080.2 | Thale cress | nucleus | 89.05 | 86.98 |
| PGSC0003DMT400012431 | Potato | mitochondrion, nucleus | 77.86 | 78.42 |
| Solyc06g063000.2.1 | Tomato | nucleus | 77.14 | 77.7 |
| CDY63384 | Canola | mitochondrion, nucleus | 76.67 | 77.03 |
| PGSC0003DMT400058919 | Potato | nucleus | 74.05 | 74.58 |
| Solyc03g122180.2.1 | Tomato | nucleus | 73.81 | 74.34 |
| GSMUA_Achr6P11660_001 | Banana | mitochondrion | 71.9 | 71.39 |
| GSMUA_Achr10P... | Banana | mitochondrion | 71.19 | 70.35 |
| GSMUA_Achr3P02150_001 | Banana | mitochondrion, nucleus | 72.14 | 69.82 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 70.0 | 66.07 |
| GSMUA_Achr11P... | Banana | nucleus | 69.76 | 65.99 |
| Os07t0615400-01 | Rice | nucleus | 66.43 | 65.34 |
| Os11t0620100-01 | Rice | nucleus | 68.57 | 65.31 |
| Zm00001d026528_P001 | Maize | plastid | 33.81 | 64.55 |
| TraesCS4D01G150600.2 | Wheat | nucleus | 68.81 | 64.37 |
| TraesCS2D01G176700.1 | Wheat | nucleus | 64.76 | 63.85 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 68.1 | 63.84 |
| Zm00001d048824_P004 | Maize | nucleus | 67.86 | 63.76 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 65.0 | 63.64 |
| EES08860 | Sorghum | nucleus | 66.67 | 63.49 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 64.52 | 63.32 |
| HORVU4Hr1G033990.7 | Barley | golgi, nucleus | 65.24 | 62.41 |
| GSMUA_Achr2P21780_001 | Banana | nucleus, plastid | 71.43 | 60.48 |
| CDX81822 | Canola | mitochondrion, nucleus | 76.43 | 58.9 |
| HORVU2Hr1G031260.2 | Barley | nucleus, plastid | 64.52 | 54.53 |
| VIT_04s0043g01000.t01 | Wine grape | cytosol, extracellular, mitochondrion | 18.57 | 53.42 |
| Zm00001d026522_P001 | Maize | nucleus | 29.52 | 50.82 |
| CDY34835 | Canola | nucleus | 25.48 | 27.23 |
| CDX82310 | Canola | nucleus | 26.19 | 26.7 |
| CDY17286 | Canola | nucleus | 25.48 | 26.42 |
| CDY22988 | Canola | nucleus | 26.19 | 26.19 |
| CDX89287 | Canola | nucleus | 25.71 | 26.09 |
| CDY19874 | Canola | nucleus | 25.95 | 26.01 |
| CDY29263 | Canola | nucleus | 25.95 | 26.01 |
| CDX99265 | Canola | nucleus | 25.71 | 25.47 |
| CDX95462 | Canola | nucleus | 26.19 | 25.35 |
| CDX92304 | Canola | nucleus | 25.48 | 25.24 |
| CDY18570 | Canola | nucleus | 25.95 | 25.12 |
| CDY68866 | Canola | nucleus | 24.76 | 25.06 |
| CDY28101 | Canola | nucleus | 25.48 | 24.94 |
| CDY14290 | Canola | nucleus | 24.76 | 24.94 |
| CDY50959 | Canola | nucleus | 25.48 | 24.88 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 25.24 | 24.88 |
| CDY29341 | Canola | nucleus | 24.76 | 24.82 |
| CDY16528 | Canola | nucleus | 25.0 | 24.76 |
| CDY46671 | Canola | nucleus | 25.24 | 24.71 |
| CDY66423 | Canola | nucleus | 24.76 | 24.41 |
| CDY32840 | Canola | nucleus | 24.29 | 24.23 |
| CDY06734 | Canola | mitochondrion | 17.14 | 23.61 |
| CDY13992 | Canola | nucleus | 22.86 | 22.91 |
| CDX95176 | Canola | nucleus | 22.62 | 22.67 |
| CDY52067 | Canola | nucleus | 22.62 | 22.67 |
| CDX92537 | Canola | nucleus | 22.38 | 22.43 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 22.38 | 21.86 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 22.14 | 21.63 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 25.95 | 21.5 |
| CDY67365 | Canola | plastid | 14.05 | 20.21 |
| CDY59539 | Canola | nucleus | 15.71 | 18.03 |
| CDY43894 | Canola | nucleus | 15.48 | 17.86 |
| CDY66740 | Canola | nucleus | 16.19 | 17.85 |
| CDY67617 | Canola | nucleus | 15.95 | 17.59 |
| CDY72408 | Canola | plastid | 3.81 | 17.2 |
| CDX69025 | Canola | nucleus, plastid | 23.33 | 16.04 |
| CDY54068 | Canola | cytosol | 24.76 | 15.93 |
| CDY51045 | Canola | cytosol | 24.76 | 15.93 |
| CDX75397 | Canola | nucleus, plastid | 23.33 | 15.91 |
| CDY62723 | Canola | cytosol | 23.33 | 15.88 |
| CDY51957 | Canola | cytosol, plastid | 23.33 | 15.83 |
| CDX89562 | Canola | nucleus | 23.57 | 15.35 |
| CDY38939 | Canola | nucleus | 23.33 | 15.22 |
| CDY46079 | Canola | nucleus | 22.62 | 15.1 |
| CDY57754 | Canola | nucleus | 7.62 | 15.02 |
| CDX71223 | Canola | cytosol | 22.62 | 14.89 |
| CDX89664 | Canola | cytosol | 21.67 | 14.82 |
| CDY67921 | Canola | nucleus | 22.38 | 14.57 |
| CDY56198 | Canola | cytosol | 16.9 | 14.52 |
| CDY30168 | Canola | cytosol | 17.62 | 13.75 |
| CDY36634 | Canola | nucleus | 21.19 | 13.71 |
| CDY41472 | Canola | cytosol, plastid | 20.48 | 13.42 |
| CDY36684 | Canola | plastid | 20.95 | 13.23 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 20.24 | 13.12 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.19 | 13.0 |
| CDY03685 | Canola | nucleus | 19.29 | 12.6 |
| CDY37935 | Canola | nucleus | 19.52 | 12.6 |
| CDX72826 | Canola | plastid | 20.48 | 12.57 |
| CDX96344 | Canola | plastid | 20.48 | 12.57 |
| CDX79296 | Canola | plastid | 4.76 | 10.93 |
| CDY67364 | Canola | nucleus | 6.43 | 9.22 |
| CDX92325 | Canola | nucleus | 6.9 | 9.01 |
| CDY08990 | Canola | cytosol | 1.19 | 5.05 |
| CDX79295 | Canola | cytosol, plastid | 1.19 | 5.0 |
| CDY37229 | Canola | cytosol | 2.38 | 4.69 |
| CDX91689 | Canola | nucleus | 3.1 | 4.26 |
Protein Annotations
| EnsemblPlants:CDY02486 | EnsemblPlantsGene:GSBRNA2T00114124001 | Gene3D:3.30.70.330 | GO:A0A078EMU9 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR44160 | PANTHER:PTHR44160:SF2 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDY02486 | ProteinID:CDY02486.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EEBD92 | MapMan:16.9.3 | : |
Description
BnaA08g00930D
Coordinates
chrLK031935:+:359749..362695
Molecular Weight (calculated)
46556.9 Da
IEP (calculated)
7.242
GRAVY (calculated)
-0.520
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MQNQRLKQQQ QQAMMQQAMM QQQHHSLYHP SLMAPPPPPP QMEPLPSGNL PPGFDPSTCR SVYAGNIHTQ VTEVLLQEIF ASTGPVESCK LIRKDKSSYG
101: FVHYFDRRSA GLAIMSLNGR HLFGQPIKVN WAYATGQRED TSSHFNIFVG DLSPEVTDAA LFESFSAFNT CSDARVMWDQ KTGRSRGFGF VSFRNQQDAQ
201: TAINEMNGKW ISSRQIRCNW ATKGATFGED KHSSDGKSVV ELTNGSEDGR EISISNEEAP ENNPQYTTVY VGNLAPEVTQ LDLHRMFHTL GAGVIEEVRV
301: QRDKGFGFVR YNTHDEAALA IQMGNSQPFL FSRPIKCSWG NKPTPTGTPS NPLPPPAPVP VPGLSPMDLL AYERQLALAK MHPQAQHSLR HVNAAGASAA
401: MYDGGFQNVA AAHQQLMYYQ
101: FVHYFDRRSA GLAIMSLNGR HLFGQPIKVN WAYATGQRED TSSHFNIFVG DLSPEVTDAA LFESFSAFNT CSDARVMWDQ KTGRSRGFGF VSFRNQQDAQ
201: TAINEMNGKW ISSRQIRCNW ATKGATFGED KHSSDGKSVV ELTNGSEDGR EISISNEEAP ENNPQYTTVY VGNLAPEVTQ LDLHRMFHTL GAGVIEEVRV
301: QRDKGFGFVR YNTHDEAALA IQMGNSQPFL FSRPIKCSWG NKPTPTGTPS NPLPPPAPVP VPGLSPMDLL AYERQLALAK MHPQAQHSLR HVNAAGASAA
401: MYDGGFQNVA AAHQQLMYYQ
001: MQNQRLIKQQ QQQQQQQHQQ AMIQQAMMQQ HPSLYHPGVM APPQMEPLPS GNLPPGFDPT TCRSVYAGNI HTQVTEILLQ EIFASTGPIE SCKLIRKDKS
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
101: SYGFVHYFDR RCASMAIMTL NGRHIFGQPM KVNWAYATGQ REDTSSHFNI FVGDLSPEVT DAALFDSFSA FNSCSDARVM WDQKTGRSRG FGFVSFRNQQ
201: DAQTAINEMN GKWVSSRQIR CNWATKGATF GEDKHSSDGK SVVELTNGSS EDGRELSNED APENNPQFTT VYVGNLSPEV TQLDLHRLFY TLGAGVIEEV
301: RVQRDKGFGF VRYNTHDEAA LAIQMGNAQP FLFSRQIRCS WGNKPTPSGT ASNPLPPPAP ASVPSLSAMD LLAYERQLAL AKMHPQAQHS LRQAGLGVNV
401: AGGTAAMYDG GYQNVAAAHQ QLMYYQ
Arabidopsis Description
UBP1AOligouridylate-binding protein 1A [Source:UniProtKB/TrEMBL;Acc:F4HV67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.