Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29263 | Canola | nucleus | 93.72 | 92.6 |
| Bra026387.1-P | Field mustard | nucleus | 82.85 | 87.28 |
| CDY14290 | Canola | nucleus | 87.44 | 86.81 |
| CDY46671 | Canola | nucleus | 89.61 | 86.48 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 88.41 | 85.92 |
| AT4G27000.1 | Thale cress | nucleus | 85.75 | 85.54 |
| CDY66423 | Canola | nucleus | 86.72 | 84.27 |
| CDY17286 | Canola | nucleus | 71.5 | 73.09 |
| CDY19874 | Canola | nucleus | 71.5 | 70.64 |
| Solyc07g064510.2.1 | Tomato | plastid | 64.49 | 65.12 |
| PGSC0003DMT400057203 | Potato | cytosol | 63.04 | 64.76 |
| CDY34835 | Canola | nucleus | 57.0 | 60.05 |
| VIT_19s0090g00280.t01 | Wine grape | nucleus | 66.18 | 59.18 |
| CDY06734 | Canola | mitochondrion | 35.75 | 48.52 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 57.97 | 47.34 |
| CDY28101 | Canola | nucleus | 47.83 | 46.15 |
| CDY29341 | Canola | nucleus | 46.62 | 46.06 |
| CDY68866 | Canola | nucleus | 46.14 | 46.02 |
| CDY32840 | Canola | nucleus | 46.62 | 45.84 |
| CDY50959 | Canola | nucleus | 47.58 | 45.81 |
| CDY13992 | Canola | nucleus | 46.14 | 45.58 |
| CDY16528 | Canola | nucleus | 46.62 | 45.52 |
| CDY22988 | Canola | nucleus | 46.14 | 45.48 |
| CDX82310 | Canola | nucleus | 45.17 | 45.39 |
| CDX92537 | Canola | nucleus | 45.41 | 44.87 |
| CDX92304 | Canola | nucleus | 45.89 | 44.81 |
| CDX99265 | Canola | nucleus | 45.89 | 44.81 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 46.38 | 44.65 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 46.14 | 44.42 |
| CDY52067 | Canola | nucleus | 44.69 | 44.15 |
| CDX95462 | Canola | nucleus | 46.14 | 44.01 |
| CDY18570 | Canola | nucleus | 45.89 | 43.78 |
| Zm00001d021149_P001 | Maize | cytosol | 17.39 | 43.64 |
| CDX95176 | Canola | nucleus | 43.96 | 43.44 |
| CDY63384 | Canola | mitochondrion, nucleus | 26.33 | 26.08 |
| CDY02486 | Canola | nucleus | 26.09 | 25.71 |
| CDY61476 | Canola | nucleus | 25.85 | 25.54 |
| CDY51403 | Canola | nucleus | 25.85 | 25.48 |
| CDY33092 | Canola | nucleus | 26.09 | 25.41 |
| CDX81822 | Canola | mitochondrion, nucleus | 26.09 | 19.82 |
| CDY67365 | Canola | plastid | 13.53 | 19.18 |
| CDY59539 | Canola | nucleus | 14.98 | 16.94 |
| CDX69025 | Canola | nucleus, plastid | 24.4 | 16.53 |
| CDY43894 | Canola | nucleus | 14.49 | 16.48 |
| CDY67617 | Canola | nucleus | 14.98 | 16.27 |
| CDY66740 | Canola | nucleus | 14.98 | 16.27 |
| CDX75397 | Canola | nucleus, plastid | 24.15 | 16.23 |
| CDY72408 | Canola | plastid | 3.62 | 16.13 |
| CDY62723 | Canola | cytosol | 23.91 | 16.05 |
| CDY51957 | Canola | cytosol, plastid | 23.91 | 15.99 |
| CDX79296 | Canola | plastid | 7.0 | 15.85 |
| CDY38939 | Canola | nucleus | 24.4 | 15.68 |
| CDX89562 | Canola | nucleus | 24.15 | 15.5 |
| CDX89664 | Canola | cytosol | 22.95 | 15.47 |
| CDY54068 | Canola | cytosol | 24.15 | 15.31 |
| CDY46079 | Canola | nucleus | 23.19 | 15.26 |
| CDY51045 | Canola | cytosol | 23.91 | 15.16 |
| CDY56198 | Canola | cytosol | 17.63 | 14.93 |
| CDX71223 | Canola | cytosol | 22.95 | 14.89 |
| CDY67921 | Canola | nucleus | 23.19 | 14.88 |
| CDY57754 | Canola | nucleus | 7.49 | 14.55 |
| CDY41472 | Canola | cytosol, plastid | 22.46 | 14.51 |
| CDY30168 | Canola | cytosol | 18.36 | 14.13 |
| CDY36634 | Canola | nucleus | 21.74 | 13.87 |
| CDY03685 | Canola | nucleus | 21.5 | 13.84 |
| CDY37935 | Canola | nucleus | 21.74 | 13.82 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.26 | 13.58 |
| CDY36684 | Canola | plastid | 21.74 | 13.53 |
| CDX72826 | Canola | plastid | 22.22 | 13.45 |
| CDX96344 | Canola | plastid | 22.22 | 13.45 |
| CDY33264 | Canola | mitochondrion, nucleus | 6.04 | 12.5 |
| CDY67364 | Canola | nucleus | 7.0 | 9.9 |
| CDY37229 | Canola | cytosol | 5.07 | 9.86 |
| CDX92325 | Canola | nucleus | 5.56 | 7.14 |
| CDX91689 | Canola | nucleus | 5.07 | 6.89 |
| CDY08990 | Canola | cytosol | 0.97 | 4.04 |
| CDX79295 | Canola | cytosol, plastid | 0.97 | 4.0 |
Protein Annotations
| EnsemblPlants:CDX89287 | EnsemblPlantsGene:GSBRNA2T00149501001 | Gene3D:3.30.70.330 | GO:A0A078DK37 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:CDX89287 | ProteinID:CDX89287.1 |
| SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0004EE32FB | MapMan:16.9.4 | : |
Description
BnaA01g16060D
Coordinates
chrLK031858:+:724362..727342
Molecular Weight (calculated)
45126.3 Da
IEP (calculated)
6.252
GRAVY (calculated)
-0.773
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQQPPPAAN GAAAGSGQDQ QAYHHQQWMM MQQQQGQPPA GWNPQSSPSP GQPQQQQYGG GSQNSGSGGE IRSLWIGDLQ PWMDESYLKN IFSTVTGEVQ
101: QAKVIRNKQS GYSEGYGFIE FVSHAAAERI LQTYNGAQMP GCEQTFRLNW AQLGAGERRQ SDGPEHTVFV GDLAPDVTDY MLTETFKAVY SSVKGAKVVT
201: DRTTGRSKGY GFVKFGDESE QIRAMTEMNG QYCSSRPMRT GPAANKKPLT MQQPGAYQSS QGNPGETDPT NTTIFVGALD ESVTEDGLKS VFGQFGELVH
301: VKIPAGKRCG FVQYANRACA EQALNQLNGT QLGGQSIRLS WGRSLNNKQT QPDQAQYGGG GYYGYPPQGY EGYGYAPPPQ DPNAYYGGYP GAGYGIYHQQ
401: PGGYQQNQQV LLWF
101: QAKVIRNKQS GYSEGYGFIE FVSHAAAERI LQTYNGAQMP GCEQTFRLNW AQLGAGERRQ SDGPEHTVFV GDLAPDVTDY MLTETFKAVY SSVKGAKVVT
201: DRTTGRSKGY GFVKFGDESE QIRAMTEMNG QYCSSRPMRT GPAANKKPLT MQQPGAYQSS QGNPGETDPT NTTIFVGALD ESVTEDGLKS VFGQFGELVH
301: VKIPAGKRCG FVQYANRACA EQALNQLNGT QLGGQSIRLS WGRSLNNKQT QPDQAQYGGG GYYGYPPQGY EGYGYAPPPQ DPNAYYGGYP GAGYGIYHQQ
401: PGGYQQNQQV LLWF
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.