Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43894 | Canola | nucleus | 96.99 | 97.53 |
| CDY66740 | Canola | nucleus | 93.72 | 90.03 |
| CDY67617 | Canola | nucleus | 93.72 | 90.03 |
| AT2G18510.1 | Thale cress | nucleus | 87.7 | 88.43 |
| VIT_04s0023g01470.t01 | Wine grape | nucleus | 73.5 | 72.12 |
| PGSC0003DMT400023075 | Potato | nucleus | 71.04 | 71.63 |
| Solyc03g118800.2.1 | Tomato | nucleus | 70.77 | 71.15 |
| KRH36396 | Soybean | endoplasmic reticulum | 70.77 | 70.96 |
| KRH27525 | Soybean | nucleus | 70.49 | 70.88 |
| PGSC0003DMT400014744 | Potato | nucleus | 70.22 | 70.6 |
| Os10t0457000-01 | Rice | nucleus | 68.03 | 70.14 |
| GSMUA_Achr5P20140_001 | Banana | nucleus | 69.4 | 69.4 |
| EER94133 | Sorghum | nucleus | 66.39 | 68.45 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 66.12 | 67.79 |
| Zm00001d032807_P001 | Maize | nucleus | 65.85 | 67.13 |
| HORVU1Hr1G038240.1 | Barley | nucleus | 66.67 | 66.3 |
| TraesCS1D01G142300.1 | Wheat | nucleus | 66.39 | 66.03 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 66.12 | 65.76 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 65.85 | 65.49 |
| CDY67365 | Canola | plastid | 19.13 | 23.97 |
| CDY72408 | Canola | plastid | 5.74 | 22.58 |
| CDY06734 | Canola | mitochondrion | 14.21 | 17.05 |
| CDY51957 | Canola | cytosol, plastid | 27.87 | 16.48 |
| CDY62723 | Canola | cytosol | 27.6 | 16.37 |
| CDY38939 | Canola | nucleus | 28.69 | 16.3 |
| CDX89562 | Canola | nucleus | 28.69 | 16.28 |
| CDX75397 | Canola | nucleus, plastid | 27.32 | 16.23 |
| CDX69025 | Canola | nucleus, plastid | 27.05 | 16.2 |
| CDY51403 | Canola | nucleus | 18.58 | 16.19 |
| CDX89664 | Canola | cytosol | 27.05 | 16.12 |
| CDY46079 | Canola | nucleus | 27.6 | 16.06 |
| CDY33092 | Canola | nucleus | 18.58 | 16.0 |
| CDY63384 | Canola | mitochondrion, nucleus | 18.03 | 15.79 |
| CDY13992 | Canola | nucleus | 18.03 | 15.75 |
| CDY61476 | Canola | nucleus | 18.03 | 15.75 |
| CDY02486 | Canola | nucleus | 18.03 | 15.71 |
| CDY67921 | Canola | nucleus | 27.6 | 15.66 |
| CDX92537 | Canola | nucleus | 17.76 | 15.51 |
| CDY33264 | Canola | mitochondrion, nucleus | 8.47 | 15.5 |
| CDY51045 | Canola | cytosol | 27.6 | 15.47 |
| CDY54068 | Canola | cytosol | 27.6 | 15.47 |
| CDY52067 | Canola | nucleus | 17.49 | 15.27 |
| CDX95176 | Canola | nucleus | 17.49 | 15.27 |
| CDX92786 | Canola | mitochondrion, nucleus, peroxisome | 17.76 | 15.26 |
| CDY46671 | Canola | nucleus | 17.76 | 15.15 |
| CDX71223 | Canola | cytosol | 26.23 | 15.05 |
| CDY34835 | Canola | nucleus | 16.12 | 15.01 |
| CDX89287 | Canola | nucleus | 16.94 | 14.98 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 17.49 | 14.88 |
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 17.49 | 14.88 |
| CDY17286 | Canola | nucleus | 16.39 | 14.81 |
| CDY29263 | Canola | nucleus | 16.94 | 14.8 |
| CDY36634 | Canola | nucleus | 25.96 | 14.64 |
| CDY14290 | Canola | nucleus | 16.67 | 14.63 |
| CDX68303 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 25.68 | 14.51 |
| CDY66423 | Canola | nucleus | 16.67 | 14.32 |
| CDY36684 | Canola | plastid | 25.68 | 14.14 |
| CDY19874 | Canola | nucleus | 16.12 | 14.08 |
| CDX92304 | Canola | nucleus | 16.12 | 13.92 |
| CDY37935 | Canola | nucleus | 24.59 | 13.82 |
| CDX99265 | Canola | nucleus | 15.85 | 13.68 |
| CDY32840 | Canola | nucleus | 15.57 | 13.54 |
| CDY68866 | Canola | nucleus | 15.3 | 13.49 |
| CDX72826 | Canola | plastid | 25.14 | 13.45 |
| CDX96344 | Canola | plastid | 25.14 | 13.45 |
| CDY16528 | Canola | nucleus | 15.57 | 13.44 |
| CDY41472 | Canola | cytosol, plastid | 23.5 | 13.42 |
| CDY03685 | Canola | nucleus | 23.5 | 13.37 |
| CDX82310 | Canola | nucleus | 15.03 | 13.35 |
| CDY22988 | Canola | nucleus | 15.3 | 13.33 |
| CDY28101 | Canola | nucleus | 15.57 | 13.29 |
| CDY50959 | Canola | nucleus | 15.57 | 13.26 |
| CDX95462 | Canola | nucleus | 15.57 | 13.13 |
| CDY29341 | Canola | nucleus | 15.03 | 13.13 |
| CDY18570 | Canola | nucleus | 15.3 | 12.9 |
| CDY30168 | Canola | cytosol | 18.31 | 12.45 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 16.94 | 12.23 |
| CDX81822 | Canola | mitochondrion, nucleus | 18.03 | 12.11 |
| CDY56198 | Canola | cytosol | 16.12 | 12.07 |
| CDX79296 | Canola | plastid | 5.74 | 11.48 |
| CDY57754 | Canola | nucleus | 6.28 | 10.8 |
| CDY37229 | Canola | cytosol | 6.28 | 10.8 |
| CDY67364 | Canola | nucleus | 7.38 | 9.22 |
| CDX91689 | Canola | nucleus | 7.65 | 9.18 |
| CDY08990 | Canola | cytosol | 1.64 | 6.06 |
| CDX79295 | Canola | cytosol, plastid | 1.37 | 5.0 |
| CDX92325 | Canola | nucleus | 2.46 | 2.8 |
Protein Annotations
| MapMan:16.4.1.2.4.4 | Gene3D:3.30.70.330 | GO:A0A078J7V1 | UniProt:A0A078J7V1 | EnsemblPlants:CDY59539 | ProteinID:CDY59539 |
| ProteinID:CDY59539.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00027349001 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44799 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | InterPro:SF3B4_RRM1 | InterPro:SF3B4_RRM2 | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0004EC3F0B | SEG:seg | : | : | : | : |
Description
BnaCnng35170DBnaCnng35170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J7V1]
Coordinates
chrLK033775:+:1389..3542
Molecular Weight (calculated)
40105.7 Da
IEP (calculated)
7.971
GRAVY (calculated)
-0.677
Length
366 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTRIAPGVG ANLLGQHSAE RNQEATVYVG GLEPQLSEEL LWELFVQAGP LVNVYVPKDR VTGLHLGYGF IEFRSEEDAD YAIKVLNMIK IHGKPIRVNK
101: ASQDKKSLDF GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IESMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPIAQKSRPH TLFASGPPTA PQANGIARPF ANGGMQPVPI PGPRPTPPPP PPQVYQTQPQ SWQSQPHQQQ HGLAVPPPMQ MQYRPPQGMP
301: PPPPPQFLHH QQGFGGPRPQ PPPQAMGMHQ HGWPPQHMQQ GGPPPPQQPM HYHHPMSIPP PPPHQG
101: ASQDKKSLDF GANLFIGNLD PDVDEKILYD TFSAFGGIAS NPKIMRDPDT GNSRGFGFIS YDSFDASDAA IESMTGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPIAQKSRPH TLFASGPPTA PQANGIARPF ANGGMQPVPI PGPRPTPPPP PPQVYQTQPQ SWQSQPHQQQ HGLAVPPPMQ MQYRPPQGMP
301: PPPPPQFLHH QQGFGGPRPQ PPPQAMGMHQ HGWPPQHMQQ GGPPPPQQPM HYHHPMSIPP PPPHQG
001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG
Arabidopsis Description
emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.