CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36396	Soybean	endoplasmic reticulum	96.43	96.16
VIT_04s0023g01470.t01	Wine grape	nucleus	83.24	81.23
Os10t0457000-01	Rice	nucleus	76.37	78.31
PGSC0003DMT400023075	Potato	nucleus	77.47	77.69
Solyc03g118800.2.1	Tomato	nucleus	77.47	77.47
PGSC0003DMT400014744	Potato	nucleus	76.92	76.92
GSMUA_Achr5P20140_001	Banana	nucleus	77.2	76.78
EER94133	Sorghum	nucleus	74.18	76.06
Zm00001d014094_P002	Maize	extracellular, plasma membrane	73.63	75.07
Zm00001d032807_P001	Maize	nucleus	73.35	74.37
HORVU1Hr1G038240.1	Barley	nucleus	73.9	73.1
AT2G18510.1	Thale cress	nucleus	72.8	73.0
TraesCS1D01G142300.1	Wheat	nucleus	73.63	72.83
TraesCS1B01G160900.1	Wheat	nucleus	73.35	72.55
TraesCS1A01G143500.1	Wheat	nucleus	73.08	72.28
CDY66740	Canola	nucleus	74.73	71.39
Bra037217.1-P	Field mustard	nucleus	74.45	71.13
CDY67617	Canola	nucleus	74.45	71.13
Bra039603.1-P	Field mustard	nucleus	70.6	70.6
CDY43894	Canola	nucleus	70.6	70.6
CDY59539	Canola	nucleus	70.88	70.49
KRH19986	Soybean	cytosol	23.9	17.58
KRH19347	Soybean	mitochondrion, nucleus	19.78	17.56
KRH02581	Soybean	mitochondrion	19.51	17.19
KRH52023	Soybean	cytosol, endoplasmic reticulum	29.4	16.98
KRH32613	Soybean	cytosol	22.8	16.97
KRH61326	Soybean	cytosol, endoplasmic reticulum	29.12	16.83
KRH05656	Soybean	endoplasmic reticulum, nucleus	30.22	16.82
KRH70673	Soybean	nucleus	29.67	16.67
KRH15385	Soybean	nucleus	29.67	16.56
KRH50336	Soybean	cytosol	29.4	16.44
KRH06218	Soybean	nucleus	18.68	16.35
KRH47641	Soybean	nucleus	18.68	16.11
KRH29709	Soybean	cytosol	17.31	15.71
KRH20867	Soybean	nucleus	17.58	15.65
KRH51075	Soybean	endoplasmic reticulum	17.03	15.62
KRH11417	Soybean	nucleus	17.58	15.57
KRH24702	Soybean	nucleus	17.03	15.46
KRH02082	Soybean	nucleus	17.03	15.42
KRH52613	Soybean	nucleus	18.41	15.4
KRH51956	Soybean	nucleus	17.31	15.33
KRH61952	Soybean	mitochondrion	17.86	15.29
KRH61258	Soybean	nucleus	17.03	15.16
KRG91724	Soybean	cytosol	26.92	15.03
KRH23136	Soybean	cytosol	17.03	14.8
KRH08608	Soybean	endoplasmic reticulum	26.92	14.71
KRH05723	Soybean	nucleus	16.48	14.53
KRH70233	Soybean	cytosol	24.73	14.31
KRH71168	Soybean	nucleus	16.76	14.15
KRH50251	Soybean	nucleus	16.76	14.15
KRG96088	Soybean	cytosol	24.73	14.15
KRH67800	Soybean	cytosol	24.45	14.08
KRH15315	Soybean	nucleus	15.93	13.65
KRH10201	Soybean	mitochondrion, nucleus, plastid	7.42	9.18

Protein Annotations

EntrezGene:100792707	MapMan:16.4.1.2.4.4	Gene3D:3.30.70.330	EMBL:ACUP02007813	EnsemblPlantsGene:GLYMA_12G240700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LVG6	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH27525	ProteinID:KRH27525	ProteinID:KRH27525.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44799	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:SF3B4_RRM1	InterPro:SF3B4_RRM2	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000233CEB1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:39926983..39931328

Molecular Weight (calculated)

39544.2 Da

IEP (calculated)

8.605

GRAVY (calculated)

-0.524

Length

364 amino acids

Sequence
(BLAST)

001: MTTRIAPGVG ANLLGQHAAE RNQDATAYVG NLDPQICEEL LWELFVQAGP VVNVYVPKDR VTNQHQGYGF VEFRSEEDAD YAIKVLNMIK LYGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIVT NPKIMRDPET GNSRGFGFIS YDSFEASDSA IEAMNGQYLC NRQITVSYAY KKDTKGERHG
201: TPAERVLAAS NPTTQKSRPH TLFASGPPTL PSAPQANGVA PVPPRPFVNG VAPAAIPTLR PPPPQAAAFQ PMPVPGQPAW HQQQPGQTML SPAMPPPQIQ
301: QFRPPHPGMQ QMPPPPQAPP RPLPPPSVMA SQPPPVWRPP PPQQQGGRPL PYPQSAMLPP PPPQ

Best Arabidopsis Sequence Match ( AT2G18510.1 )
(BLAST)

001: MTTRIAPGVG ANLLGQHSAE RNQDATVYVG GLDAQLSEEL LWELFVQAGP VVNVYVPKDR VTNLHQNYGF IEYRSEEDAD YAIKVLNMIK LHGKPIRVNK
101: ASQDKKSLDV GANLFIGNLD PDVDEKLLYD TFSAFGVIAS NPKIMRDPDT GNSRGFGFIS YDSFEASDAA IESMTGQYLS NRQITVSYAY KKDTKGERHG
201: TPAERLLAAT NPTAQKSRPH TLFAMGPPSS APQVNGLPRP FANGSMQPVP IPAPRQPPPP PPQVYQTQPP SWPSQPQQHS MVPPPMQFRP PQGMPPPPPP
301: QFLNHQQGFG GPRPPPPPQA MGMHQHGGWP PQHMQQQGGP PQQQQPPYQH HHMSMPPPPP HQG

Arabidopsis Description

emb2444Emb2444 [Source:UniProtKB/TrEMBL;Acc:A0A178VZK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.