CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	KRH16959	AT3G49580.1	21798944
AT1G22760.1	KRH53667	AT3G49580.1	21798944
AT1G22760.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g02490.t01	Wine grape	plastid	73.47	72.69
KRH70233	Soybean	cytosol	69.94	72.5
KRH08608	Soybean	endoplasmic reticulum	73.01	71.47
PGSC0003DMT400064531	Potato	cytosol	54.45	66.73
GSMUA_Achr5P24940_001	Banana	plastid	62.73	61.41
KRH50336	Soybean	cytosol	59.82	59.91
KRH70673	Soybean	nucleus	59.36	59.72
KRH15385	Soybean	nucleus	59.51	59.51
KRH05656	Soybean	endoplasmic reticulum, nucleus	58.59	58.41
KRH52023	Soybean	cytosol, endoplasmic reticulum	56.13	58.1
KRH61326	Soybean	cytosol, endoplasmic reticulum	55.83	57.78
Bra016371.1-P	Field mustard	plastid	48.93	53.61
CDY41472	Canola	cytosol, plastid	51.53	52.42
AT1G22760.1	Thale cress	nucleus, plastid	52.3	51.67
AT1G71770.1	Thale cress	cytosol, plastid	53.07	50.73
Bra016118.1-P	Field mustard	plastid	52.76	50.29
CDX96344	Canola	plastid	52.76	50.29
CDY37935	Canola	nucleus	50.0	50.08
CDX68303	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	49.69	50.0
CDX72826	Canola	plastid	52.45	50.0
Bra003915.1-P	Field mustard	cytosol	49.54	49.85
CDY36684	Canola	plastid	50.46	49.47
CDY03685	Canola	nucleus	48.16	48.83
Bra007984.1-P	Field mustard	plastid	46.63	48.72
KRH32613	Soybean	cytosol	31.75	42.33
KRH67800	Soybean	cytosol	40.95	42.25
KRH19986	Soybean	cytosol	31.6	41.62
KRG96088	Soybean	cytosol	40.49	41.51
KRH36396	Soybean	endoplasmic reticulum	15.18	27.12
KRH27525	Soybean	nucleus	15.03	26.92
KRH10201	Soybean	mitochondrion, nucleus, plastid	11.81	26.19
KRH24702	Soybean	nucleus	14.88	24.19
KRH29709	Soybean	cytosol	14.88	24.19
KRH23136	Soybean	cytosol	15.34	23.87
KRH61258	Soybean	nucleus	14.88	23.72
KRH05723	Soybean	nucleus	14.88	23.49
KRH51956	Soybean	nucleus	14.42	22.87
KRH02082	Soybean	nucleus	13.96	22.64
KRH15315	Soybean	nucleus	14.72	22.59
KRH51075	Soybean	endoplasmic reticulum	13.65	22.42
KRH20867	Soybean	nucleus	13.96	22.25
KRH11417	Soybean	nucleus	13.96	22.14
KRH71168	Soybean	nucleus	14.42	21.81
KRH06218	Soybean	nucleus	13.8	21.63
KRH50251	Soybean	nucleus	14.11	21.35
KRH47641	Soybean	nucleus	13.8	21.33
KRH02581	Soybean	mitochondrion	13.34	21.07
KRH19347	Soybean	mitochondrion, nucleus	13.19	20.98
KRH61952	Soybean	mitochondrion	13.5	20.71
KRH52613	Soybean	nucleus	13.8	20.69

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100783163	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02012701	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G171200	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1NH63	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	EnsemblPlants:KRG91724	ProteinID:KRG91724	ProteinID:KRG91724.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF620	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000233D959
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:40892556..40896862

Molecular Weight (calculated)

71293.0 Da

IEP (calculated)

8.886

GRAVY (calculated)

-0.409

Length

652 amino acids

Sequence
(BLAST)

001: MAAAISSPMA QSVAAAATPV IAPGVALGGG PFANASLYVG DLEGNVNEEQ LYDLFSQVAQ IASIRVCRDQ TKRSSLGYAY VNFANAQDAS NAMELLNFTP
101: LNGKPIRIMF SQRDPSIRKS GHGNVFIKNL DTSIDNKALH DTFAAFGTVL SCKVALDSSG QSKGYGFVQF DNEEAAQNAI KRLNGMLIND KQVYVGLFIR
201: RQEREQTNGS PKFTNVYVKN LSETYTDEDL KKLFGPYGTI TSATVMKDVN GKSRCFGFVN FQNPDSAAAA VERLNGTTIN NDRVLYVGRA QRKAEREAEL
301: KAKIEQERIS RYEKLQGANL YLKNLDDSFS DEKLKDLFSE FGTITSCKVM IDSNGRSKGS GFVSFSTPEE ASKALNEMNG KLIGRKPLYV AVAQRKEERK
401: AHLQAQFAQI RAPGGMAPLP AGIPLYHPGA PRLAPQQLYY GQGTPGFMPP QPAGFSFQQQ ILPGMRPGVA PNFIMPYHLQ RQGQLGQRTG VRRNGNFQQV
501: QQNQMLHRNS NQGFRYMPNG RNGMDPSLVP HGLMGPMMPM PFDGSGVTAA PNDNQRPGAL STTLASALAS ATPENQRMML GEHLYPLVER LAPNQYTAKV
601: TGMLLEMDQS EVINLIESPE DLKTKVSEAM QVLHEVASGS EVDQLGSMSL NE

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.