Factsheet for Bra016371.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra017974.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22760.1	Bra017974.1-P	AT3G49580.1	21798944
AT1G22760.1	Bra000943.1-P	AT4G01090.1	21798944
AT1G22760.1	Bra037384.1-P	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41472	Canola	cytosol, plastid	93.78	87.05
AT1G22760.1	Thale cress	nucleus, plastid	89.58	80.76
Bra016118.1-P	Field mustard	plastid	75.46	65.64
Bra003915.1-P	Field mustard	cytosol	68.74	63.12
Bra007984.1-P	Field mustard	plastid	65.55	62.5
PGSC0003DMT400064531	Potato	cytosol	44.87	50.19
Bra013104.1-P	Field mustard	cytosol	51.76	50.0
VIT_18s0001g02490.t01	Wine grape	plastid	55.29	49.92
Bra011488.1-P	Field mustard	cytosol, plastid	51.26	49.76
KRG91724	Soybean	cytosol	53.61	48.93
Bra034603.1-P	Field mustard	cytosol, plastid	49.92	47.98
Bra018797.1-P	Field mustard	cytosol	51.26	46.71
GSMUA_Achr5P24940_001	Banana	plastid	51.76	46.25
KRH08608	Soybean	endoplasmic reticulum	51.26	45.8
KRH70233	Soybean	cytosol	48.24	45.63
Bra032172.1-P	Field mustard	cytosol	49.24	45.5
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	47.4	45.05
Bra015220.1-P	Field mustard	cytosol	42.35	43.6
Bra034301.1-P	Field mustard	mitochondrion	7.9	42.34
Bra022413.1-P	Field mustard	cytosol	28.24	37.67
Bra039841.1-P	Field mustard	cytosol	11.26	31.46
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	26.55	30.27
Bra027446.1-P	Field mustard	cytosol	13.45	25.0
Bra039603.1-P	Field mustard	nucleus	14.79	24.18
Bra019078.1-P	Field mustard	nucleus	16.47	23.79
Bra002947.1-P	Field mustard	nucleus	15.63	23.48
Bra037217.1-P	Field mustard	nucleus	14.96	23.36
Bra002230.1-P	Field mustard	nucleus	15.97	22.67
Bra018813.1-P	Field mustard	mitochondrion, nucleus	14.79	22.56
Bra006502.1-P	Field mustard	nucleus	15.97	22.09
Bra031774.1-P	Field mustard	nucleus	14.62	22.08
Bra010418.1-P	Field mustard	nucleus	13.95	21.96
Bra001735.1-P	Field mustard	nucleus	14.79	21.36
Bra022389.1-P	Field mustard	nucleus	15.13	21.13
Bra026387.1-P	Field mustard	nucleus	13.95	21.12
Bra030908.1-P	Field mustard	nucleus	14.29	20.29
Bra037962.1-P	Field mustard	nucleus	13.95	19.71
Bra030985.1-P	Field mustard	mitochondrion, nucleus	13.61	19.38
Bra040663.1-P	Field mustard	nucleus	12.1	19.35
Bra037538.1-P	Field mustard	nucleus	12.77	18.86
Bra014216.1-P	Field mustard	nucleus	12.44	12.94

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra016371	EnsemblPlants:Bra016371.1	EnsemblPlants:Bra016371.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0060211	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	UniProt:M4DIP4	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD
PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF620
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00025465C3	SEG:seg	:

Description

AT1G22760 (E=6e-263) PAB3 | PAB3 (POLY(A) BINDING PROTEIN 3); RNA binding / translation initiation factor

Coordinates

chrA08:-:18100114..18103261

Molecular Weight (calculated)

66073.8 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.469

Length

595 amino acids

Sequence
(BLAST)

001: MAAAVATGVA PSTMIDQVPS PTAAQTSVQV SVSVPVQSPV VAADQTHPNS SLYVGDLDPR VAEAHLFDLF KHIASVVSVR VCRDQNRRSL GYAYINFSNP
101: NDAIRAMEAL NYTPLFDRPI RIMLSNRDPS TRKSGKGNIF IKSLDASIDN KALFETFSSF GTILSCKVAT DVTGQSKGYG FVQFEKEESA QAAIDKLNGM
201: LMNDKQVYVA HFIRRQERSR EENAPTPRFT NVYVKNLPKE IGEDELRKTF GKFGSISSAV VMRDQSGNSR CFGFVNFECA EAAAQAVEKM NGISLGDDVL
301: FVGRAQKKSE REQELRRKFE EERMNRFEKS QGANLYLKNL DDSVDDEKLK EMFSEFGNVT SSKVMVNPQG ISRGFGFVAY SNPEEASRAL NEMNGKMIGR
401: KPLYIALAQR KEDRQAHLQA LFSQIRAPES MQSPMTGFNH PRGGPMHGPP QHMYVGQNGR SSMVPSQPMG YGFQPQFMPG MRPGSGPGNF IMPYPLQRQP
501: QAGHRMGFGR GATNMPHHIQ QQQQMLGERL YPLVERQEPL HVAKVTGMLL EMDQAEILHL MESPEALKSK VSEALDVLRL SADAPDHDLG FSTID

Best Arabidopsis Sequence Match ( AT1G22760.1 )
(BLAST)

001: MAAAVATGVA PATMVDQVPS PTAQTSVQVP VSIPLPSPVV VADQTHPNSS LYAGDLDPKV TEAHLFDLFK HVANVVSVRV CRDQNRRSLG YAYINFSNPN
101: DAYRAMEALN YTPLFDRPIR IMLSNRDPST RLSGKGNIFI KNLDASIDNK ALFETFSSFG TILSCKVAMD VTGRSKGYGF VQFEKEESAQ AAIDKLNGML
201: MNDKQVFVGH FIRRQERARD ENTPTPRFTN VYVKNLPKEI GEDELRKTFG KFGVISSAVV MRDQSGNSRC FGFVNFECTE AAASAVEKMN GISLGDDVLY
301: VGRAQKKSER EEELRRKFEQ ERINRFEKSQ GANLYLKNLD DSVDDEKLKE MFSEYGNVTS SKVMLNPQGM SRGFGFVAYS NPEEALRALS EMNGKMIGRK
401: PLYIALAQRK EDRRAHLQAL FSQIRAPGPM SGFHHPPGGP MPGPPQHMYV GQNGASMVPS QPIGYGFQPQ FMPGMRPGSG PGNFIVPYPL QRQPQTGPRM
501: GFRRGATNVQ QHIQQQQLMH RNPSPGMRYM NGASNGRNGM DSSVPQGILP PIIPLPIDAS SISHQKAPLL PISKLTSSLA SASPADRTRM LGEQLYPLVE
601: RHEPLHVAKV TGMLLEMDQA EILHLMESPE ALKSKVSEAL DVLRLSVDPT DHDLGFSTTD

Arabidopsis Description

PAB3Polyadenylate-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O64380]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.