Factsheet for Bra018813.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28101	Canola	nucleus	99.49	90.44
CDY50959	Canola	nucleus	99.49	90.23
Bra040663.1-P	Field mustard	nucleus	76.92	80.65
AT1G49600.3	Thale cress	nucleus	84.1	72.89
Bra022389.1-P	Field mustard	nucleus	76.92	70.42
Bra001735.1-P	Field mustard	nucleus	74.36	70.39
Bra037538.1-P	Field mustard	nucleus	68.97	66.75
GSMUA_Achr9P15210_001	Banana	nucleus	50.26	62.82
GSMUA_Achr3P06840_001	Banana	nucleus	49.74	62.18
VIT_03s0063g00850.t01	Wine grape	nucleus	65.64	61.84
Bra027446.1-P	Field mustard	cytosol	50.51	61.56
Solyc01g108500.2.1	Tomato	nucleus	63.59	60.05
GSMUA_Achr10P...	Banana	nucleus	48.21	59.87
GSMUA_Achr6P10190_001	Banana	nucleus	47.95	59.74
PGSC0003DMT400066648	Potato	nucleus	63.33	58.81
KRH50251	Soybean	nucleus	64.62	58.47
TraesCS5B01G241400.1	Wheat	nucleus	50.77	57.89
KRH71168	Soybean	nucleus	63.85	57.77
TraesCS5A01G243500.1	Wheat	nucleus	50.51	57.6
TraesCS5D01G250100.1	Wheat	nucleus	50.51	57.6
Solyc10g050860.1.1	Tomato	nucleus	62.05	56.54
Os02t0567900-01	Rice	cytosol, nucleus	37.44	56.37
Bra014216.1-P	Field mustard	nucleus	81.28	55.42
TraesCS6A01G204400.1	Wheat	mitochondrion	49.49	50.92
Os04t0449900-01	Rice	plastid	50.26	50.65
GSMUA_Achr6P09470_001	Banana	nucleus	18.97	50.34
GSMUA_Achr3P01720_001	Banana	mitochondrion	51.54	49.88
KXG35789	Sorghum	nucleus	54.36	48.4
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	52.56	48.35
Zm00001d020748_P002	Maize	plasma membrane	53.33	48.04
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	52.82	47.58
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	49.23	46.04
TraesCS2A01G317700.2	Wheat	plastid	49.74	45.75
TraesCS2D01G315400.2	Wheat	plastid	49.74	45.75
TraesCS2B01G335700.1	Wheat	plastid	49.23	45.71
EES10898	Sorghum	nucleus	49.23	45.39
Bra019078.1-P	Field mustard	nucleus	47.95	45.39
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	51.28	45.35
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	48.46	45.32
Bra002947.1-P	Field mustard	nucleus	45.64	44.95
Bra031774.1-P	Field mustard	nucleus	45.38	44.92
EES05289	Sorghum	plastid	49.49	44.37
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	48.21	44.03
Zm00001d050838_P001	Maize	plastid	48.46	43.95
Bra010418.1-P	Field mustard	nucleus	41.28	42.59
Bra026387.1-P	Field mustard	nucleus	42.82	42.49
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	48.97	41.89
Bra002230.1-P	Field mustard	nucleus	43.85	40.81
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	49.49	40.72
Zm00001d025551_P002	Maize	plastid	46.92	40.49
Bra006502.1-P	Field mustard	nucleus	43.08	39.07
Bra030985.1-P	Field mustard	mitochondrion, nucleus	26.92	25.12
Bra037962.1-P	Field mustard	nucleus	25.9	23.99
Bra030908.1-P	Field mustard	nucleus	25.64	23.87
Bra034301.1-P	Field mustard	mitochondrion	6.15	21.62
Bra013104.1-P	Field mustard	cytosol	23.85	15.1
Bra037217.1-P	Field mustard	nucleus	14.62	14.96
Bra011488.1-P	Field mustard	cytosol, plastid	23.33	14.85
Bra039603.1-P	Field mustard	nucleus	13.85	14.84
Bra016371.1-P	Field mustard	plastid	22.56	14.79
Bra034603.1-P	Field mustard	cytosol, plastid	23.33	14.7
Bra032172.1-P	Field mustard	cytosol	23.85	14.44
Bra018797.1-P	Field mustard	cytosol	22.31	13.32
Bra015220.1-P	Field mustard	cytosol	19.74	13.32
Bra007984.1-P	Field mustard	plastid	21.28	13.3
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.69	13.22
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	21.03	13.1
Bra016118.1-P	Field mustard	plastid	22.56	12.87
Bra003915.1-P	Field mustard	cytosol	20.51	12.35
Bra022413.1-P	Field mustard	cytosol	13.59	11.88
Bra039841.1-P	Field mustard	cytosol	2.31	4.23

Protein Annotations

EnsemblPlants:Bra018813.1	EnsemblPlants:Bra018813.1-P	EnsemblPlantsGene:Bra018813	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000253EB71	UniProt:M4DQM0	MapMan:16.9.4	:

Description

AT1G49600 (E=1e-163) ATRBP47A | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding

Coordinates

chrA06:-:1798300..1801189

Molecular Weight (calculated)

42430.1 Da

IEP (calculated)

6.179

GRAVY (calculated)

-0.619

Length

390 amino acids

Sequence
(BLAST)

001: MAMMQHPAAM AMMQQQQMMM YPHQYAPYGQ GHYQHPQFQY AAYQQQQQQN HQQRGGSGGD DVKTLWVGDL LHWMDETYLH TCFSHTNEVS SVKVIRNKQT
101: SQSEGYGFVE FLSRSAAEEV LQSYSGVTMP NAEQPFRLNW ASFSTGEKRA SENGGPDLSI FVGDLAPDVT DATLLETFAG YQSVKGAKVV IDSNTGRSKG
201: YGFVRFGDEN ERSRALTEMN GAFCSSRQMR VGIATPKRAA AYGQQNGSQA LTLAGGHGGN GSMSDGDSNN STIFVGGLDA DVTEEDLMQP FSQFGEVVSV
301: KIPVGKGCGF VQFGNRQSAE EAIGSLNGTV IGKNTVRLSW GRSPNRQWRG DSGHQWNGGY SRGQGYNNNG YANQESNMYA TEAAAVPGAS

Best Arabidopsis Sequence Match ( AT1G49600.1 )
(BLAST)

001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS

Arabidopsis Description

ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.