Factsheet for HORVU5Hr1G069180.3

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus

Predictor Summary:

plastid 2
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G241400.1	Wheat	nucleus	78.75	99.71
TraesCS5D01G250100.1	Wheat	nucleus	78.52	99.42
TraesCS5A01G243500.1	Wheat	nucleus	78.52	99.42
KXG35789	Sorghum	nucleus	88.45	87.44
Zm00001d020748_P002	Maize	plasma membrane	87.07	87.07
GSMUA_Achr9P15210_001	Banana	nucleus	61.43	85.26
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	81.76	83.49
GSMUA_Achr3P06840_001	Banana	nucleus	59.12	82.05
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	78.75	77.32
VIT_18s0001g11080.t01	Wine grape	nucleus	62.82	65.07
PGSC0003DMT400020621	Potato	nucleus	59.12	64.65
KRH61258	Soybean	nucleus	60.97	64.55
KRH05723	Soybean	nucleus	61.2	64.16
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	61.2	63.55
KRH51956	Soybean	nucleus	59.35	62.53
KRH15315	Soybean	nucleus	61.2	62.35
Bra027446.1-P	Field mustard	cytosol	45.03	60.94
Solyc04g079310.2.1	Tomato	nucleus	61.2	58.76
VIT_03s0063g00850.t01	Wine grape	nucleus	55.2	57.73
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	56.12	56.91
CDY06734	Canola	mitochondrion	39.49	56.07
AT1G47490.1	Thale cress	nucleus	55.2	55.32
AT1G47500.1	Thale cress	nucleus	55.43	55.3
Solyc01g108500.2.1	Tomato	nucleus	51.96	54.48
KRH50251	Soybean	nucleus	53.58	53.83
PGSC0003DMT400066648	Potato	nucleus	51.96	53.57
KRH71168	Soybean	nucleus	53.12	53.36
Solyc10g050860.1.1	Tomato	nucleus	52.42	53.04
Bra018813.1-P	Field mustard	mitochondrion, nucleus	47.58	52.82
CDY52067	Canola	nucleus	50.58	52.27
CDX95176	Canola	nucleus	50.35	52.03
CDY32840	Canola	nucleus	49.42	50.83
CDY16528	Canola	nucleus	49.65	50.71
CDY29341	Canola	nucleus	48.5	50.12
CDY28101	Canola	nucleus	49.65	50.12
CDY50959	Canola	nucleus	49.65	50.0
AT3G19130.1	Thale cress	nucleus	49.88	49.66
CDY22988	Canola	nucleus	48.04	49.52
CDX82310	Canola	nucleus	46.88	49.27
Bra001735.1-P	Field mustard	nucleus	46.88	49.27
CDY68866	Canola	nucleus	46.88	48.92
CDX92304	Canola	nucleus	47.81	48.82
Bra022389.1-P	Field mustard	nucleus	47.81	48.59
CDX99265	Canola	nucleus	47.34	48.35
Bra040663.1-P	Field mustard	nucleus	41.11	47.85
HORVU4Hr1G075700.5	Barley	nucleus	45.96	47.84
CDY18570	Canola	nucleus	47.81	47.7
CDX95462	Canola	nucleus	47.58	47.47
AT1G49600.3	Thale cress	nucleus	46.88	45.11
Bra037538.1-P	Field mustard	nucleus	41.57	44.66
HORVU7Hr1G066510.3	Barley	plastid	41.11	40.73
HORVU2Hr1G106810.1	Barley	nucleus	43.42	40.69
HORVU2Hr1G064650.4	Barley	nucleus	29.33	37.24
HORVU2Hr1G046380.2	Barley	nucleus	34.41	33.79
Bra014216.1-P	Field mustard	nucleus	42.49	32.17
HORVU4Hr1G033990.7	Barley	golgi, nucleus	22.86	22.55
HORVU7Hr1G052090.3	Barley	nucleus	25.17	22.06
HORVU2Hr1G031260.2	Barley	nucleus, plastid	24.71	21.53
HORVU1Hr1G038240.1	Barley	nucleus	14.32	16.85
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	19.63	13.91
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	22.86	13.83
HORVU4Hr1G059070.1	Barley	cytosol	19.4	12.84
HORVU5Hr1G050560.1	Barley	plastid	20.55	12.68
HORVU2Hr1G122920.2	Barley	nucleus	19.17	8.2
HORVU2Hr1G123110.1	Barley	nucleus, plastid	19.17	7.81

Protein Annotations

EnsemblPlants:HORVU5Hr1G069180.3	EnsemblPlantsGene:HORVU5Hr1G069180	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR43955	PANTHER:PTHR43955:SF5	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000B4897BB	UniProt:A0A287RNM9	MapMan:16.9.4	:	:

Description

No Description!

Coordinates

chrchr5H:-:521145624..521149988

Molecular Weight (calculated)

46340.2 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.397

Length

433 amino acids

Sequence
(BLAST)

001: MQAATVAAAA NGGGEVQKQQ QQVGAAPLPA VAALAPQPHW VAMPFAPPGA AAMVVPHQMA PAPPHQFAPH FVPFHAVAPP PPPLQPRVGV AMGSPAPAAQ
101: PGQEENKTIW VGDLHYWMDE NYLHTCFGYT GEVVAIKVIR NKQTGQSEGY GFVEFYSHAA AEKVLDGFAG HIMPNTDQPF RINWASFSMG DRRSDIASDH
201: SIFVGDLASD VNDTALLETF SSRYSSVKGA KVVIDANTGR SKGYGFVRFG DDSEKTNAMT EMNGVYCSTR PMRIGPATPR KSSGTSGSTG SSARSDGDLT
301: NTTVFVGGLD PNVSEDDLKQ TFSQYGEISS VKIPVGKQCG FVQFLQRKNA EDALQGLNGS TIGKQTVRLS WGRNPANKQL RSDNGNQWNN GMYYAPSPFY
401: NGYGYPAAPF PDPGMYAAAY GAYPLYGNQQ QVS

Best Arabidopsis Sequence Match ( AT1G47490.1 )
(BLAST)

001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS

Arabidopsis Description

RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.