Factsheet for Bra014216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16528	Canola	nucleus	65.73	88.68
CDY32840	Canola	nucleus	63.99	86.94
Bra040663.1-P	Field mustard	nucleus	56.29	86.56
Bra018813.1-P	Field mustard	mitochondrion, nucleus	55.42	81.28
Bra037538.1-P	Field mustard	nucleus	49.48	70.22
AT1G49600.3	Thale cress	nucleus	52.45	66.67
Bra022389.1-P	Field mustard	nucleus	49.13	65.96
Bra001735.1-P	Field mustard	nucleus	47.38	65.78
VIT_03s0063g00850.t01	Wine grape	nucleus	40.91	56.52
Solyc01g108500.2.1	Tomato	nucleus	39.69	54.96
PGSC0003DMT400066648	Potato	nucleus	39.51	53.81
GSMUA_Achr6P09470_001	Banana	nucleus	13.81	53.74
GSMUA_Achr9P15210_001	Banana	nucleus	29.02	53.21
KRH71168	Soybean	nucleus	40.03	53.13
KRH50251	Soybean	nucleus	40.03	53.13
GSMUA_Achr3P06840_001	Banana	nucleus	28.32	51.92
Solyc10g050860.1.1	Tomato	nucleus	38.81	51.87
GSMUA_Achr10P...	Banana	nucleus	28.32	51.59
Bra027446.1-P	Field mustard	cytosol	28.67	51.25
GSMUA_Achr6P10190_001	Banana	nucleus	27.97	51.12
TraesCS5D01G250100.1	Wheat	nucleus	29.72	49.71
TraesCS5B01G241400.1	Wheat	nucleus	29.72	49.71
TraesCS5A01G243500.1	Wheat	nucleus	29.55	49.42
Os02t0567900-01	Rice	cytosol, nucleus	20.8	45.95
Os04t0449900-01	Rice	plastid	30.24	44.7
TraesCS6A01G204400.1	Wheat	mitochondrion	29.55	44.59
GSMUA_Achr3P01720_001	Banana	mitochondrion	30.77	43.67
Bra010418.1-P	Field mustard	nucleus	28.15	42.59
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	32.17	42.49
TraesCS2B01G335700.1	Wheat	plastid	31.12	42.38
KXG35789	Sorghum	nucleus	32.34	42.24
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	31.29	42.22
Zm00001d020748_P002	Maize	plasma membrane	31.82	42.03
TraesCS2A01G317700.2	Wheat	plastid	31.12	41.98
TraesCS2D01G315400.2	Wheat	plastid	31.12	41.98
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	30.42	41.73
Bra031774.1-P	Field mustard	nucleus	28.67	41.62
EES10898	Sorghum	nucleus	30.77	41.61
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	29.9	41.01
Bra026387.1-P	Field mustard	nucleus	28.15	40.97
Bra002947.1-P	Field mustard	nucleus	27.8	40.15
EES05289	Sorghum	plastid	30.42	40.0
Bra019078.1-P	Field mustard	nucleus	28.5	39.56
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	30.42	39.46
Zm00001d050838_P001	Maize	plastid	29.55	39.3
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	28.85	38.64
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	30.24	37.94
Zm00001d025551_P002	Maize	plastid	29.37	37.17
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	30.24	36.5
Bra002230.1-P	Field mustard	nucleus	26.22	35.8
Bra006502.1-P	Field mustard	nucleus	25.7	34.19
Bra030985.1-P	Field mustard	mitochondrion, nucleus	16.78	22.97
Bra037962.1-P	Field mustard	nucleus	16.08	21.85
Bra030908.1-P	Field mustard	nucleus	15.91	21.72
Bra034301.1-P	Field mustard	mitochondrion	4.02	20.72
Bra037217.1-P	Field mustard	nucleus	9.97	14.96
Bra039603.1-P	Field mustard	nucleus	9.44	14.84
Bra013104.1-P	Field mustard	cytosol	13.99	12.99
Bra016371.1-P	Field mustard	plastid	12.94	12.44
Bra015220.1-P	Field mustard	cytosol	12.41	12.28
Bra034603.1-P	Field mustard	cytosol, plastid	13.29	12.28
Bra032172.1-P	Field mustard	cytosol	13.81	12.27
Bra011488.1-P	Field mustard	cytosol, plastid	13.11	12.23
Bra007984.1-P	Field mustard	plastid	12.24	11.22
Bra016118.1-P	Field mustard	plastid	13.29	11.11
Bra018797.1-P	Field mustard	cytosol	12.59	11.03
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	11.71	10.7
Bra003915.1-P	Field mustard	cytosol	12.06	10.65
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	9.62	10.54
Bra022413.1-P	Field mustard	cytosol	6.82	8.74
Bra039841.1-P	Field mustard	cytosol	1.4	3.76

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra014216	EnsemblPlants:Bra014216.1	EnsemblPlants:Bra014216.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4DCK1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI0002546352	SEG:seg	:	:

Description

AT1G49600 (E=3e-107) ATRBP47A | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding

Coordinates

chrA08:-:2439735..2444247

Molecular Weight (calculated)

61933.6 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.401

Length

572 amino acids

Sequence
(BLAST)

001: MMDAMLNVDG WISEQMGDHG KTALTAAITK VLAEERKAKA IAFDEIDKAP EEKKRGNTIA TVCLLLLLFL STPILIMLVL CLVVGALRDS SQSGALGASR
101: GSGHTTPALF YLALGGSLLS YIYSAPPLKL GIAIVYNFKS VEGDRAMGLQ SLLVAFGTEA AKWICVSAID VTQISVAAEV VSEYSRSDQD SSKMQTTNNG
201: PDSSSAGTTP PPLQQPTPPP QQQHWQNQQQ WMAAMQYPMA MMQQQQHMMM YPHQYAPYSQ GHYQHPPQFH YAPYHQQQHQ QRGGSGGDDV KTLWVGDLLH
301: WMDETYLHTC FSHTNEVSSV KVIRNKQTNQ SEGYGFVEFL SRSAAEEVLQ SYSGVTMPNA DQPFRLNWAS FSTGEKRASE NGGPDLSIFV GDLAPDVTDA
401: LLLETFAGYQ SVKGAKVVID SNTGRSKGYG FVRFGDESER SRALTEMNGA FCSSRQMRVG IATPKRASAY GQQNGSQALT LAGGHGANGS VSDGDSNNST
501: SAEEAIENLN GTVIGKNTVR LSWGRSPNRQ WRGEAGHQWN GGYSRGQGYS NGYANQDSNM YATAAAAVPG AS

Best Arabidopsis Sequence Match ( AT1G49600.1 )
(BLAST)

001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS

Arabidopsis Description

ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.