Factsheet for Bra040663.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29341	Canola	nucleus	98.39	87.35
Bra018813.1-P	Field mustard	mitochondrion, nucleus	80.65	76.92
Bra037538.1-P	Field mustard	nucleus	74.19	68.49
Bra001735.1-P	Field mustard	nucleus	71.77	64.81
AT1G49600.3	Thale cress	nucleus	77.96	64.44
Bra022389.1-P	Field mustard	nucleus	72.85	63.62
Bra014216.1-P	Field mustard	nucleus	86.56	56.29
Solyc01g108500.2.1	Tomato	nucleus	60.48	54.48
VIT_03s0063g00850.t01	Wine grape	nucleus	60.48	54.35
PGSC0003DMT400066648	Potato	nucleus	59.68	52.86
GSMUA_Achr9P15210_001	Banana	nucleus	43.82	52.24
KRH50251	Soybean	nucleus	60.22	51.97
KRH71168	Soybean	nucleus	59.95	51.74
GSMUA_Achr3P06840_001	Banana	nucleus	43.01	51.28
Solyc10g050860.1.1	Tomato	nucleus	58.87	51.17
GSMUA_Achr10P...	Banana	nucleus	42.2	50.0
GSMUA_Achr6P09470_001	Banana	nucleus	19.62	49.66
Bra027446.1-P	Field mustard	cytosol	42.47	49.38
GSMUA_Achr6P10190_001	Banana	nucleus	41.13	48.88
TraesCS5D01G250100.1	Wheat	nucleus	44.62	48.54
TraesCS5B01G241400.1	Wheat	nucleus	44.62	48.54
TraesCS5A01G243500.1	Wheat	nucleus	44.35	48.25
Os02t0567900-01	Rice	cytosol, nucleus	30.91	44.4
Os04t0449900-01	Rice	plastid	45.16	43.41
Bra010418.1-P	Field mustard	nucleus	43.28	42.59
GSMUA_Achr3P01720_001	Banana	mitochondrion	45.97	42.43
TraesCS6A01G204400.1	Wheat	mitochondrion	43.01	42.22
HORVU5Hr1G069180.3	Barley	nucleus, peroxisome, plastid	47.85	41.11
TraesCS2B01G335700.1	Wheat	plastid	46.24	40.95
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	46.51	40.8
Bra026387.1-P	Field mustard	nucleus	43.01	40.71
EES10898	Sorghum	nucleus	46.24	40.66
KXG35789	Sorghum	nucleus	47.85	40.64
TraesCS2A01G317700.2	Wheat	plastid	46.24	40.57
TraesCS2D01G315400.2	Wheat	plastid	46.24	40.57
Zm00001d020748_P002	Maize	plasma membrane	47.04	40.42
Bra031774.1-P	Field mustard	nucleus	42.74	40.36
HORVU6Hr1G048390.1	Barley	cytoskeleton, nucleus, peroxisome	44.62	39.81
Bra019078.1-P	Field mustard	nucleus	44.09	39.81
TraesCS6D01G184600.1	Wheat	cytosol, nucleus, plastid	44.09	39.33
Bra002947.1-P	Field mustard	nucleus	41.4	38.89
EES05289	Sorghum	plastid	44.89	38.39
Zm00001d050838_P001	Maize	plastid	43.55	37.67
HORVU2Hr1G078910.4	Barley	mitochondrion, nucleus	43.01	37.47
Os09t0462700-01	Rice	mitochondrion, nucleus, plastid	44.35	37.41
Zm00001d025551_P002	Maize	plastid	44.35	36.5
TraesCS6B01G228100.1	Wheat	endoplasmic reticulum, plastid, vacuole	44.35	36.18
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	45.16	35.44
Bra002230.1-P	Field mustard	nucleus	38.98	34.61
Bra006502.1-P	Field mustard	nucleus	38.71	33.49
Bra030985.1-P	Field mustard	mitochondrion, nucleus	24.73	22.01
Bra037962.1-P	Field mustard	nucleus	24.46	21.62
Bra030908.1-P	Field mustard	nucleus	24.19	21.48
Bra034301.1-P	Field mustard	mitochondrion	6.18	20.72
Bra037217.1-P	Field mustard	nucleus	14.78	14.44
Bra039603.1-P	Field mustard	nucleus	13.98	14.29
Bra034603.1-P	Field mustard	cytosol, plastid	20.16	12.12
Bra016371.1-P	Field mustard	plastid	19.35	12.1
Bra011488.1-P	Field mustard	cytosol, plastid	19.89	12.07
Bra013104.1-P	Field mustard	cytosol	19.62	11.85
Bra032172.1-P	Field mustard	cytosol	20.16	11.65
Bra015220.1-P	Field mustard	cytosol	18.01	11.59
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	18.01	10.7
Bra007984.1-P	Field mustard	plastid	17.74	10.58
Bra016118.1-P	Field mustard	plastid	19.35	10.53
Bra003915.1-P	Field mustard	cytosol	18.28	10.49
Bra018797.1-P	Field mustard	cytosol	18.28	10.41
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	13.98	9.96
Bra022413.1-P	Field mustard	cytosol	9.95	8.3
Bra039841.1-P	Field mustard	cytosol	1.88	3.29

Protein Annotations

EnsemblPlants:Bra040663.1	EnsemblPlants:Bra040663.1-P	EnsemblPlantsGene:Bra040663	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR43955	PANTHER:PTHR43955:SF6	PFAM:PF00076	PFscan:PS50102	SEG:seg
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002547E8C	UniProt:M4FHT5	MapMan:16.9.4	:

Description

AT1G49600 (E=2e-117) ATRBP47A | ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a); RNA binding

Coordinates

chrA05:-:13129232..13131566

Molecular Weight (calculated)

40498.8 Da

IEP (calculated)

7.069

GRAVY (calculated)

-0.735

Length

372 amino acids

Sequence
(BLAST)

001: MQPANNGQDS SSATAAGTTP PLQQPPPPPP PQQQQQWQQH QQWMAAMAMM QQQQMMMYPQ YAPYHHHPQF QYAPPSYHQK NQQQRGGGDD VKTLWIGDLL
101: HWMDETYLHT CFSHTNQVSS VKVIRNKQTC QSEGYGFVEF LSRSAAEEVL QSYSGVTMPN AEQPFRLNWA SFSTGEKRAS ENGPDLSIFV GDLAPDVTDT
201: VLLETFAAYQ SVKGAKVVID SNTGRSKGYG FVRFGDENER SKALTEMNGA FCSSRQMRVG VATPKRAAAY GQPNASQALT LAGGHGGNGS MADGESNNST
301: SAEEAIGSLN GTVIGKNTVR LSWGRSPNKQ WRSDSGNQWN VGYSRGQGYN NGNANHDSNM YATAAAAVPG AS

Best Arabidopsis Sequence Match ( AT1G49600.1 )
(BLAST)

001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQWRSDSGN QWNGGYSRGQ GYNNGYANQD SNMYATAAAA VPGAS

Arabidopsis Description

ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.