Factsheet for Bra031774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34835	Canola	nucleus	97.46	97.71
AT1G11650.2	Thale cress	nucleus	86.8	84.44
KRH20867	Soybean	nucleus	65.48	63.08
KRH11417	Soybean	nucleus	65.23	62.53
KRH51075	Soybean	endoplasmic reticulum	62.94	62.47
KRH02082	Soybean	nucleus	63.45	62.19
Solyc10g005260.2.1	Tomato	nucleus	62.18	59.61
PGSC0003DMT400029379	Potato	nucleus	59.9	59.0
Solyc03g031720.2.1	Tomato	nucleus	60.15	58.52
PGSC0003DMT400013036	Potato	nucleus	58.88	58.0
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	60.15	57.38
TraesCS7A01G295700.3	Wheat	plastid	44.92	56.91
PGSC0003DMT400042504	Potato	nucleus	59.64	56.9
Bra019078.1-P	Field mustard	nucleus	59.14	56.55
Bra010418.1-P	Field mustard	nucleus	51.52	53.7
TraesCS6A01G100800.1	Wheat	nucleus	55.08	52.93
Os04t0625800-01	Rice	nucleus	56.85	52.71
TraesCS6B01G128900.2	Wheat	plastid	55.58	52.52
TraesCS6D01G081700.2	Wheat	plastid	54.57	52.44
KXG27152	Sorghum	nucleus	57.61	52.3
Zm00001d026346_P002	Maize	extracellular	56.6	52.1
Os08t0190200-00	Rice	nucleus	58.38	52.04
Bra026387.1-P	Field mustard	nucleus	51.78	51.91
Bra002947.1-P	Field mustard	nucleus	52.03	51.77
Zm00001d049416_P001	Maize	extracellular, nucleus	59.9	51.75
KXG24662	Sorghum	nucleus	59.9	51.75
TraesCS2D01G472700.1	Wheat	nucleus	57.11	51.61
TraesCS2A01G473000.1	Wheat	nucleus	57.11	51.61
TraesCS2B01G495700.1	Wheat	nucleus	57.11	51.61
TraesCS7B01G199000.1	Wheat	nucleus, plastid	55.08	51.54
Bra027446.1-P	Field mustard	cytosol	41.37	50.94
Zm00001d002244_P003	Maize	nucleus	57.36	50.45
Bra002230.1-P	Field mustard	nucleus	48.48	45.58
Bra018813.1-P	Field mustard	mitochondrion, nucleus	44.92	45.38
HORVU2Hr1G106810.1	Barley	nucleus	52.28	44.59
HORVU7Hr1G066510.3	Barley	plastid	49.24	44.39
Bra006502.1-P	Field mustard	nucleus	47.97	43.95
Bra001735.1-P	Field mustard	nucleus	44.92	42.96
Bra040663.1-P	Field mustard	nucleus	40.36	42.74
Bra022389.1-P	Field mustard	nucleus	45.69	42.25
Bra037538.1-P	Field mustard	nucleus	38.58	37.72
Bra014216.1-P	Field mustard	nucleus	41.62	28.67
Bra030985.1-P	Field mustard	mitochondrion, nucleus	27.41	25.84
Bra037962.1-P	Field mustard	nucleus	26.65	24.94
Bra030908.1-P	Field mustard	nucleus	26.4	24.82
Bra034301.1-P	Field mustard	mitochondrion	5.33	18.92
Bra034603.1-P	Field mustard	cytosol, plastid	24.62	15.67
Bra011488.1-P	Field mustard	cytosol, plastid	24.37	15.66
Bra039603.1-P	Field mustard	nucleus	14.47	15.66
Bra037217.1-P	Field mustard	nucleus	14.97	15.49
Bra032172.1-P	Field mustard	cytosol	25.13	15.37
Bra013104.1-P	Field mustard	cytosol	23.86	15.26
Bra016371.1-P	Field mustard	plastid	22.08	14.62
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	22.59	14.22
Bra015220.1-P	Field mustard	cytosol	20.56	14.01
Bra018797.1-P	Field mustard	cytosol	23.1	13.94
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	17.77	13.41
Bra007984.1-P	Field mustard	plastid	20.3	12.82
Bra003915.1-P	Field mustard	cytosol	20.3	12.35
Bra022413.1-P	Field mustard	cytosol	13.96	12.33
Bra016118.1-P	Field mustard	plastid	21.32	12.28
Bra039841.1-P	Field mustard	cytosol	4.31	7.98
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	2.28	7.2

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra031774	EnsemblPlants:Bra031774.1	EnsemblPlants:Bra031774.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0006950	GO:GO:0008150
GO:GO:0009719	GO:GO:0009735	GO:GO:0010193	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4ESJ5
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025430D0	SEG:seg	:

Description

AT1G11650 (E=3e-157) ATRBP45B, RBP45B | RNA-binding protein 45 (RBP45), putative

Coordinates

chrA09:-:34792779..34795947

Molecular Weight (calculated)

43210.4 Da

IEP (calculated)

5.987

GRAVY (calculated)

-0.577

Length

394 amino acids

Sequence
(BLAST)

001: MMQHPPPGGL LPHHVPPPSA QQHYGYQQPP PYAMPGAAPP QMWNPQAAPP SQPMTADEIR TLWIGDLQFW MDENFLYSCF AHTGEVLSVK VIRNKQTSQV
101: EGYGFIEFVS HAAAERALQT YNNTPIPGLP DHLFRLNWAS LGTGDKRDDS PDYTIFVGDL AADVTDYVLL ETLRASYPSV KGAKVFIDRA TGSTKGYGFV
201: WFSDESEQIR AMSEMNGVPC SSRPMRIGPA ASKKGVSGQR DSYQSAASGV PTDNDPNNTT VFVGGLDPTI TDDHLKNVFS QYGEIVHVKI PAGKRCGFVQ
301: FSEKSCAEEA IRNLNGMQLG GTTVRLSWGR SPSSKQAADP SQYYYGGYGQ GQEHYGYSMP QDPNAYYGGY PGGYQQPPQV GQQPPQQQQV GFSY

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.