Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G100800.1 | Wheat | nucleus | 95.44 | 97.07 |
| TraesCS6D01G081700.2 | Wheat | plastid | 94.96 | 96.59 |
| TraesCS7B01G199000.1 | Wheat | nucleus, plastid | 92.09 | 91.21 |
| Os08t0190200-00 | Rice | nucleus | 79.38 | 74.89 |
| KXG24662 | Sorghum | nucleus | 80.82 | 73.9 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 79.62 | 72.81 |
| TraesCS2B01G495700.1 | Wheat | nucleus | 74.1 | 70.87 |
| HORVU7Hr1G066510.3 | Barley | plastid | 73.38 | 70.02 |
| KRH20867 | Soybean | nucleus | 60.67 | 61.86 |
| KRH11417 | Soybean | nucleus | 60.19 | 61.07 |
| KRH51075 | Soybean | endoplasmic reticulum | 58.03 | 60.96 |
| KRH02082 | Soybean | nucleus | 58.27 | 60.45 |
| Solyc03g031720.2.1 | Tomato | nucleus | 56.12 | 57.78 |
| PGSC0003DMT400029379 | Potato | nucleus | 55.4 | 57.75 |
| Solyc10g005260.2.1 | Tomato | nucleus | 56.59 | 57.42 |
| PGSC0003DMT400013036 | Potato | nucleus | 54.92 | 57.25 |
| CDY34835 | Canola | nucleus | 53.24 | 56.49 |
| Solyc02g080420.2.1 | Tomato | extracellular, nucleus, plastid | 55.88 | 56.42 |
| AT1G11650.2 | Thale cress | nucleus | 54.44 | 56.05 |
| PGSC0003DMT400042504 | Potato | nucleus | 55.4 | 55.93 |
| Bra031774.1-P | Field mustard | nucleus | 52.52 | 55.58 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 42.93 | 52.34 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 56.35 | 50.65 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 51.32 | 46.62 |
| TraesCS2B01G335700.1 | Wheat | plastid | 44.6 | 44.29 |
| CDY34639 | Canola | nucleus, plastid, vacuole | 52.76 | 43.39 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 43.41 | 39.69 |
| TraesCS2B01G195400.1 | Wheat | nucleus | 23.02 | 22.38 |
| TraesCS7B01G138700.1 | Wheat | mitochondrion, nucleus | 23.02 | 21.48 |
| TraesCS4B01G148600.1 | Wheat | nucleus | 20.86 | 19.55 |
| TraesCS1B01G160900.1 | Wheat | nucleus | 13.43 | 15.22 |
| TraesCS2B01G378400.1 | Wheat | nucleus | 22.54 | 14.14 |
| TraesCS5B01G159400.1 | Wheat | cytosol | 21.1 | 13.52 |
| TraesCS4B01G204800.1 | Wheat | cytosol | 20.62 | 13.21 |
| TraesCS7B01G182800.3 | Wheat | cytosol | 21.34 | 13.19 |
| TraesCS3B01G090800.1 | Wheat | mitochondrion | 17.51 | 11.68 |
| TraesCS2B01G601400.1 | Wheat | nucleus | 20.62 | 8.98 |
| TraesCS2B01G599000.1 | Wheat | nucleus | 20.38 | 8.74 |
| TraesCS2B01G598800.1 | Wheat | nucleus | 20.86 | 8.31 |
| VIT_18s0001g10190.t01 | Wine grape | cytosol, mitochondrion | 1.68 | 5.6 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G128900.2 | EnsemblPlantsGene:TraesCS6B01G128900 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF3 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr6B:-:124476533..124480452
Molecular Weight (calculated)
45535.5 Da
IEP (calculated)
7.039
GRAVY (calculated)
-0.558
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPQPQPGVV PPQWGAIPPP MPPHHLYAPP PPQMWGQPLP PQQAAYGQQA AYYGRPAAPT QAPAGPNEVR TLWLGDLQYW MDENYVYNCF ASTGEVQSVK
101: LIRDKQTGQL QGYGFIEFTS RAGAERALQT FNGAMMPNAE MAYRLNWATA GGKHDDGADY TIFVGDLAAD VTDYVLQETF RVQYPSVKGA KVVTDKLTMR
201: PKGYGFVKFG DPTEQTRAMT EMNGRLCSSR PMRIGPAANK QKATGVQEKV PSSQGVQTDN DPSNSTIFVG GLDPNATEDV LKQVFTPYGD VVHVKIPVGK
301: RCGFVQYASR SSAEEALLIL QGTMIGGQNV RLSWGRSPSN KQVQSQQDFN HWGGATANAG YYGYAQGYGA YGYAATQPQD PNMYGYGTYA GYPNYPQQVA
401: QQPQQEPVKS SLNVDAV
101: LIRDKQTGQL QGYGFIEFTS RAGAERALQT FNGAMMPNAE MAYRLNWATA GGKHDDGADY TIFVGDLAAD VTDYVLQETF RVQYPSVKGA KVVTDKLTMR
201: PKGYGFVKFG DPTEQTRAMT EMNGRLCSSR PMRIGPAANK QKATGVQEKV PSSQGVQTDN DPSNSTIFVG GLDPNATEDV LKQVFTPYGD VVHVKIPVGK
301: RCGFVQYASR SSAEEALLIL QGTMIGGQNV RLSWGRSPSN KQVQSQQDFN HWGGATANAG YYGYAQGYGA YGYAATQPQD PNMYGYGTYA GYPNYPQQVA
401: QQPQQEPVKS SLNVDAV
001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEK
Arabidopsis Description
RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.