Factsheet for Zm00001d049416_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24662	Sorghum	nucleus	95.39	95.39
TraesCS7A01G295700.3	Wheat	plastid	56.36	82.64
Os08t0190200-00	Rice	nucleus	78.51	81.0
TraesCS6A01G100800.1	Wheat	nucleus	72.15	80.24
TraesCS6D01G081700.2	Wheat	plastid	71.71	79.76
TraesCS6B01G128900.2	Wheat	plastid	72.81	79.62
Zm00001d026346_P002	Maize	extracellular	73.03	77.8
TraesCS7B01G199000.1	Wheat	nucleus, plastid	71.49	77.43
Zm00001d002244_P003	Maize	nucleus	74.34	75.67
KRH20867	Soybean	nucleus	58.77	65.53
KRH51075	Soybean	endoplasmic reticulum	56.8	65.24
KRH02082	Soybean	nucleus	57.02	64.68
HORVU7Hr1G066510.3	Barley	plastid	61.62	64.3
KRH11417	Soybean	nucleus	57.89	64.23
Zm00001d013812_P001	Maize	nucleus	56.36	63.3
Solyc03g031720.2.1	Tomato	nucleus	54.82	61.73
PGSC0003DMT400029379	Potato	nucleus	53.73	61.25
Solyc10g005260.2.1	Tomato	nucleus	55.04	61.07
CDY34835	Canola	nucleus	52.63	61.07
PGSC0003DMT400013036	Potato	nucleus	53.51	61.0
AT1G11650.2	Thale cress	nucleus	53.73	60.49
Bra031774.1-P	Field mustard	nucleus	51.75	59.9
Solyc02g080420.2.1	Tomato	extracellular, nucleus, plastid	53.95	59.56
PGSC0003DMT400042504	Potato	nucleus	53.73	59.32
Zm00001d009512_P001	Maize	mitochondrion	15.79	54.55
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	16.67	53.52
Zm00001d021633_P006	Maize	nucleus	53.51	52.47
Zm00001d010739_P001	Maize	mitochondrion	14.04	51.61
CDY34639	Canola	nucleus, plastid, vacuole	52.19	46.94
Zm00001d021149_P001	Maize	cytosol	16.67	46.06
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	42.54	45.75
Zm00001d020748_P002	Maize	plasma membrane	43.42	45.73
Zm00001d006496_P004	Maize	nucleus	53.29	44.75
Zm00001d050838_P001	Maize	plastid	41.45	43.95
Zm00001d007929_P002	Maize	nucleus	33.99	43.18
Zm00001d025551_P002	Maize	plastid	41.45	41.81
Zm00001d016252_P001	Maize	nucleus	34.21	41.49
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	41.01	39.45
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	16.89	28.73
Zm00001d026528_P001	Maize	plastid	12.5	25.91
Zm00001d027869_P002	Maize	nucleus	41.01	24.51
Zm00001d031525_P004	Maize	nucleus	23.9	23.39
Zm00001d048824_P004	Maize	nucleus	22.37	22.82
Zm00001d049759_P003	Maize	nucleus	21.49	21.4
Zm00001d026522_P001	Maize	nucleus	10.96	20.49
Zm00001d014094_P002	Maize	extracellular, plasma membrane	12.72	16.25
Zm00001d032807_P001	Maize	nucleus	12.28	15.6
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	20.61	14.42
Zm00001d025801_P005	Maize	cytosol, plastid	20.61	14.42
Zm00001d019824_P004	Maize	cytosol	19.96	13.87
Zm00001d005276_P007	Maize	cytosol	19.74	13.76
Zm00001d046487_P001	Maize	cytosol	18.64	13.22
Zm00001d047790_P001	Maize	plastid	17.76	11.02
VIT_18s0001g10190.t01	Wine grape	cytosol, mitochondrion	1.75	6.4

Protein Annotations

EntrezGene:100273450	MapMan:16.9.4	Gene3D:3.30.70.330	ProteinID:AQK50318.1	UniProt:B4FTW4	EMBL:BT040552
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF3	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00017B7DB3	EnsemblPlantsGene:Zm00001d049416	EnsemblPlants:Zm00001d049416_P001
EnsemblPlants:Zm00001d049416_T001	SEG:seg	:	:	:	:

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr4:+:29867913..29874842

Molecular Weight (calculated)

49344.1 Da

IEP (calculated)

6.516

GRAVY (calculated)

-0.586

Length

456 amino acids

Sequence
(BLAST)

001: MMPQQQQPGM APPPPQAAPG APPHWGGIPP PMAPQHQYAP PPTHQAPPPP QMWGQAPPPP PPPQAAYGQA PPPPQAAYGQ ALPPPQAAYG QAPPPPQAAY
101: YGAVPAPAAV AAAPVGPSEV RTLWIGDLQY WMDDNYIYGC FASTGEVQNV KLIRDKHTGQ LQGYGFIEFI SRAAAERVLQ TYNGTMMPNV ELPFRLNWAS
201: AGEKRDDTPD YTIFVGDLAA DVTDYVLQET FRAHYPSVKG AKVVTDKLTM RTKGYGFVKF GDPNEQARAM TEMNGMLCSS RPMRIGPAAN KKATVVQEKV
301: PSAQGVQSDN DPNNTTIFVG GLDPNVTEDM LKQVFTPYGD VVHVKIPVGK RCGFVQYANR SSAEEALVIL QGTLVGGQNV RLSWGRSPSN KQVQPQQDSN
401: QWAGANAGYY GYGQGYEAYG YPQSQDPNMY NYGAGAYAGY PNYQQQPVAQ QPPQQQ

Best Arabidopsis Sequence Match ( AT1G11650.2 )
(BLAST)

001: MMQQPPPGGI LPHHAPPPSA QQQYGYQQPY GIAGAAPPPP QMWNPQAAAP PSVQPTTADE IRTLWIGDLQ YWMDENFLYG CFAHTGEMVS AKVIRNKQTG
101: QVEGYGFIEF ASHAAAERVL QTFNNAPIPS FPDQLFRLNW ASLSSGDKRD DSPDYTIFVG DLAADVTDYI LLETFRASYP SVKGAKVVID RVTGRTKGYG
201: FVRFSDESEQ IRAMTEMNGV PCSTRPMRIG PAASKKGVTG QRDSYQSSAA GVTTDNDPNN TTVFVGGLDA SVTDDHLKNV FSQYGEIVHV KIPAGKRCGF
301: VQFSEKSCAE EALRMLNGVQ LGGTTVRLSW GRSPSNKQSG DPSQFYYGGY GQGQEQYGYT MPQDPNAYYG GYSGGGYSGG YQQTPQAGQQ PPQQPPQQQQ
401: VGFSY

Arabidopsis Description

RBP45BRBP45B [Source:UniProtKB/TrEMBL;Acc:A0A178WLD6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.