Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d009512_P001 | Maize | mitochondrion | 78.23 | 73.48 |
| Zm00001d018546_P001 | Maize | endoplasmic reticulum, extracellular | 79.03 | 69.01 |
| Zm00001d017181_P001 | Maize | mitochondrion, nucleus, plastid | 87.9 | 40.67 |
| Zm00001d021149_P001 | Maize | cytosol | 41.94 | 31.52 |
| Os07t0516900-01 | Rice | plastid | 60.48 | 29.88 |
| Zm00001d016252_P001 | Maize | nucleus | 78.23 | 25.8 |
| Zm00001d021633_P006 | Maize | nucleus | 78.23 | 20.86 |
| GSMUA_Achr9P24980_001 | Banana | cytosol | 52.42 | 19.64 |
| GSMUA_Achr6P29410_001 | Banana | nucleus | 47.58 | 17.99 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 66.94 | 17.89 |
| TraesCS2D01G227900.5 | Wheat | nucleus | 66.13 | 17.67 |
| TraesCS2B01G247400.4 | Wheat | nucleus | 66.13 | 17.67 |
| Zm00001d013812_P001 | Maize | nucleus | 56.45 | 17.24 |
| Zm00001d006496_P004 | Maize | nucleus | 72.58 | 16.57 |
| Zm00001d007929_P002 | Maize | nucleus | 46.77 | 16.16 |
| Zm00001d026528_P001 | Maize | plastid | 28.23 | 15.91 |
| GSMUA_Achr8P03580_001 | Banana | cytosol, mitochondrion, nucleus | 50.81 | 15.48 |
| Zm00001d026346_P002 | Maize | extracellular | 49.19 | 14.25 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 48.39 | 14.15 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.19 | 14.09 |
| GSMUA_Achr10P... | Banana | nucleus | 49.19 | 14.06 |
| Zm00001d049416_P001 | Maize | extracellular, nucleus | 51.61 | 14.04 |
| Zm00001d025551_P002 | Maize | plastid | 49.19 | 13.5 |
| Zm00001d050838_P001 | Maize | plastid | 46.77 | 13.49 |
| Zm00001d002244_P003 | Maize | nucleus | 48.39 | 13.39 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 46.77 | 12.24 |
| HORVU2Hr1G046380.2 | Barley | nucleus | 39.52 | 11.11 |
| Zm00001d027869_P002 | Maize | nucleus | 51.61 | 8.39 |
| Zm00001d048824_P004 | Maize | nucleus | 29.03 | 8.05 |
| Zm00001d031525_P004 | Maize | nucleus | 29.03 | 7.73 |
| Zm00001d014094_P002 | Maize | extracellular, plasma membrane | 21.77 | 7.56 |
| Zm00001d032807_P001 | Maize | nucleus | 21.77 | 7.52 |
| Zm00001d049759_P003 | Maize | nucleus | 27.42 | 7.42 |
| Zm00001d047790_P001 | Maize | plastid | 25.0 | 4.22 |
| Zm00001d046487_P001 | Maize | cytosol | 20.97 | 4.04 |
| Zm00001d025801_P005 | Maize | cytosol, plastid | 20.97 | 3.99 |
| Zm00001d003106_P003 | Maize | extracellular, mitochondrion, plasma membrane | 20.16 | 3.83 |
| Zm00001d005276_P007 | Maize | cytosol | 18.55 | 3.52 |
| Zm00001d019824_P004 | Maize | cytosol | 18.55 | 3.51 |
| Zm00001d026522_P001 | Maize | nucleus | 2.42 | 1.23 |
Protein Annotations
| EnsemblPlants:Zm00001d010739_P001 | EnsemblPlants:Zm00001d010739_T001 | EnsemblPlantsGene:Zm00001d010739 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:AQK94775.1 |
| SUPFAM:SSF54928 | UniParc:UPI0004DEC915 | UniProt:A0A1D6FTB3 | MapMan:35.1 | : | : |
Description
Polyadenylate-binding protein RBP45C
Coordinates
chr8:+:126400109..126402007
Molecular Weight (calculated)
13539.9 Da
IEP (calculated)
6.956
GRAVY (calculated)
-0.318
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKEWRAFS SSLLCSNGVE ITSVKIIRNK QTGHSEGYGF IEFSSRAAAE HTLINFNGQM MSNVEMTFKL NWASASTGDK RGDSGSDHTI FVGDLAHGVT
101: DSMLEDVFRA KYPSVRGANV AVDT
101: DSMLEDVFRA KYPSVRGANV AVDT
001: MQTPNNNGST DSVLPPTSAG TTPPPPLQQS TPPPQQQQQQ QWQQQQQWMA AMQQYPAAAM AMMQQQQMMM YPHPQYAPYN QAAYQQHPQF QYAAYQQQQQ
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
101: QHHQSQQQPR GGSGGDDVKT LWVGDLLHWM DETYLHTCFS HTNEVSSVKV IRNKQTCQSE GYGFVEFLSR SAAEEALQSF SGVTMPNAEQ PFRLNWASFS
201: TGEKRASENG PDLSIFVGDL APDVSDAVLL ETFAGRYPSV KGAKVVIDSN TGRSKGYGFV RFGDENERSR AMTEMNGAFC SSRQMRVGIA TPKRAAAYGQ
301: QNGSQALTLA GGHGGNGSMS DGESNNSTIF VGGLDADVTE EDLMQPFSDF GEVVSVKIPV GKGCGFVQFA NRQSAEEAIG NLNGTVIGKN TVRLSWGRSP
401: NKQVQENFSW ICVFKHYMHF YWYGPMVQVK LSFRVLLGLY ISVFMGWIKL
Arabidopsis Description
ATRBP47ARNA-binding protein 47A [Source:TAIR;Acc:AT1G49600]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.