Factsheet for Zm00001d017181_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010739_P001	Maize	mitochondrion	40.67	87.9
Zm00001d009512_P001	Maize	mitochondrion	36.19	73.48
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	36.19	68.31
Zm00001d021149_P001	Maize	cytosol	20.52	33.33
Os07t0516900-01	Rice	plastid	30.97	33.07
Zm00001d016252_P001	Maize	nucleus	45.15	32.18
Zm00001d021633_P006	Maize	nucleus	44.78	25.81
TraesCS2A01G221900.2	Wheat	nucleus	37.69	21.77
TraesCS2B01G247400.4	Wheat	nucleus	37.31	21.55
TraesCS2D01G227900.5	Wheat	nucleus	37.31	21.55
Zm00001d006496_P004	Maize	nucleus	42.91	21.18
GSMUA_Achr9P24980_001	Banana	cytosol	24.25	19.64
Zm00001d013812_P001	Maize	nucleus	29.1	19.21
GSMUA_Achr6P29410_001	Banana	nucleus	22.01	17.99
Zm00001d026346_P002	Maize	extracellular	27.61	17.29
Zm00001d049416_P001	Maize	extracellular, nucleus	28.73	16.89
Zm00001d026528_P001	Maize	plastid	13.81	16.82
Zm00001d002244_P003	Maize	nucleus	27.61	16.52
GSMUA_Achr8P03580_001	Banana	cytosol, mitochondrion, nucleus	25.0	16.46
Zm00001d007929_P002	Maize	nucleus	22.01	16.43
GSMUA_Achr10P...	Banana	nucleus	26.49	16.36
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	25.75	16.27
Zm00001d020748_P002	Maize	plasma membrane	25.37	15.7
Zm00001d050838_P001	Maize	plastid	23.51	14.65
Zm00001d025551_P002	Maize	plastid	24.63	14.6
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	23.13	13.08
HORVU2Hr1G046380.2	Barley	nucleus	18.66	11.34
Zm00001d027869_P002	Maize	nucleus	25.37	8.91
Zm00001d048824_P004	Maize	nucleus	14.55	8.72
Zm00001d031525_P004	Maize	nucleus	14.18	8.15
Zm00001d014094_P002	Maize	extracellular, plasma membrane	10.82	8.12
Zm00001d032807_P001	Maize	nucleus	10.82	8.08
Zm00001d049759_P003	Maize	nucleus	13.43	7.86
Zm00001d046487_P001	Maize	cytosol	10.45	4.35
Zm00001d047790_P001	Maize	plastid	11.94	4.35
Zm00001d025801_P005	Maize	cytosol, plastid	10.07	4.14
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	9.33	3.83
Zm00001d005276_P007	Maize	cytosol	9.33	3.82
Zm00001d019824_P004	Maize	cytosol	9.33	3.81
Zm00001d026522_P001	Maize	nucleus	1.87	2.05

Protein Annotations

Gene3D:3.30.530.20	Gene3D:3.30.70.330	MapMan:35.1	UniProt:A0A1D6HCV9	ProteinID:AQK72535.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0020037	GO:GO:0055114
GO:GO:0098869	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR023393	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF10604	PFscan:PS50102	PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	InterPro:Polyketide_cyclase/dehydratase	InterPro:RBD_domain_sf
InterPro:RRM_dom	SUPFAM:SSF54928	SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI0008453A09	EnsemblPlantsGene:Zm00001d017181
EnsemblPlants:Zm00001d017181_P001	EnsemblPlants:Zm00001d017181_T001	SEG:seg	:	:	:

Description

Polyadenylate-binding protein RBP45C

Coordinates

chr5:+:188161345..188173644

Molecular Weight (calculated)

29414.2 Da

IEP (calculated)

8.628

GRAVY (calculated)

-0.246

Length

268 amino acids

Sequence
(BLAST)

001: MVGLVGGSTA RAEHVVANAG GEAEYVRRMH RHAPTEHQCT STLVKHIKAP VHLVWELVRR FDQPQRYKPF VRNCVVRGDQ LEVGSLRDVN VNPGLDMPAT
101: VACEIKAQLV RTAEAARQLA PMLEVGRPSY QGRSSVYQSS SKMMSAISVA HLGCKDMDVV DVGVITSVKI IRNKQTGHSE GYGFIEFSSR ATAEHTLINF
201: NRQMMSNVEM TFKLNWASAS TGDKRGDSGS DHTIFVGDLA HGVTDSMLED VFRAKYPSVR GANVVVDT

Best Arabidopsis Sequence Match ( AT5G19350.1 )
(BLAST)

001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK

Arabidopsis Description

RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.