Factsheet for Zm00001d047790_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40160	Sorghum	nucleus	87.76	89.46
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	65.58	74.5
TraesCS4A01G099500.1	Wheat	cytosol	61.5	69.33
TraesCS4B01G204800.1	Wheat	cytosol	61.22	69.12
TraesCS4D01G205700.1	Wheat	cytosol	61.36	69.07
HORVU4Hr1G059070.1	Barley	cytosol	60.95	68.5
KRH32613	Soybean	cytosol	31.43	47.24
Solyc10g085750.1.1	Tomato	nucleus	39.73	46.95
VIT_08s0007g04380.t01	Wine grape	cytosol	40.27	46.69
KRH19986	Soybean	cytosol	31.16	46.26
PGSC0003DMT400021673	Potato	cytosol	39.46	46.18
CDY72408	Canola	plastid	5.71	45.16
KRH67800	Soybean	cytosol	38.64	44.94
KRG96088	Soybean	cytosol	38.64	44.65
Bra034301.1-P	Field mustard	mitochondrion	6.67	44.14
GSMUA_Achr9P10860_001	Banana	cytosol	42.86	44.06
PGSC0003DMT400033802	Potato	cytosol	35.78	43.26
Solyc09g008620.1.1	Tomato	cytosol	35.24	42.81
AT2G36660.1	Thale cress	cytosol, plastid	34.29	41.38
CDY33264	Canola	mitochondrion, nucleus	10.48	38.5
Zm00001d005276_P007	Maize	cytosol	33.61	37.77
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	33.47	37.73
Zm00001d019824_P004	Maize	cytosol	33.61	37.65
Zm00001d046487_P001	Maize	cytosol	32.93	37.64
Zm00001d025801_P005	Maize	cytosol, plastid	32.52	36.66
CDY57754	Canola	nucleus	10.61	36.62
CDY30168	Canola	cytosol	23.67	32.34
CDY56198	Canola	cytosol	21.09	31.7
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	21.5	30.27
Zm00001d009512_P001	Maize	mitochondrion	4.49	25.0
Zm00001d010739_P001	Maize	mitochondrion	4.22	25.0
Zm00001d021149_P001	Maize	cytosol	5.58	24.85
Zm00001d032807_P001	Maize	nucleus	12.11	24.79
Zm00001d014094_P002	Maize	extracellular, plasma membrane	11.97	24.65
Zm00001d026528_P001	Maize	plastid	7.07	23.64
Zm00001d018546_P001	Maize	endoplasmic reticulum, extracellular	4.49	23.24
Zm00001d013812_P001	Maize	nucleus	12.11	21.92
Zm00001d020748_P002	Maize	plasma membrane	12.65	21.48
Zm00001d005912_P001	Maize	cytosol, nucleus, peroxisome, plastid	11.97	20.75
Zm00001d031525_P004	Maize	nucleus	13.06	20.6
Zm00001d007929_P002	Maize	nucleus	9.8	20.06
Zm00001d048824_P004	Maize	nucleus	11.84	19.46
Zm00001d025551_P002	Maize	plastid	11.84	19.25
Zm00001d026346_P002	Maize	extracellular	11.16	19.16
Zm00001d049759_P003	Maize	nucleus	11.84	19.0
Zm00001d050838_P001	Maize	plastid	10.88	18.6
Zm00001d002244_P003	Maize	nucleus	11.29	18.53
Zm00001d049416_P001	Maize	extracellular, nucleus	11.02	17.76
Zm00001d021633_P006	Maize	nucleus	11.16	17.63
Zm00001d016897_P002	Maize	endoplasmic reticulum, nucleus, peroxisome, plastid	10.88	16.88
Zm00001d016252_P001	Maize	nucleus	8.16	15.96
Zm00001d006496_P004	Maize	nucleus	11.29	15.29
Zm00001d026522_P001	Maize	nucleus	4.35	13.11
Zm00001d017181_P001	Maize	mitochondrion, nucleus, plastid	4.35	11.94
Zm00001d027869_P002	Maize	nucleus	11.84	11.4

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:103639307	MapMan:17.4.2.5	Gene3D:3.30.70.330	ProteinID:AQL07617.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:K7VF25
InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658
PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570
TIGRFAMs:TIGR01628	UniParc:UPI000221E23C	EnsemblPlantsGene:Zm00001d047790	EnsemblPlants:Zm00001d047790_P001	EnsemblPlants:Zm00001d047790_T001	SEG:seg

Description

Polyadenylate-binding protein 7

Coordinates

chr9:-:141813590..141817989

Molecular Weight (calculated)

81337.9 Da

IEP (calculated)

9.426

GRAVY (calculated)

-0.452

Length

735 amino acids

Sequence
(BLAST)

001: MNGRPASART VSRTRRALRR LKGGGGLPVA SLGPSPRRNR RVAETSSPVS PPHRSLSRAP LGSSLQVCLL LSFNMPASEM EAPASAHASA AAADDSQEDS
101: APTAAVAAAA DEAQPAAAAV PALYVGDLHE DVAEEHLFEA FSKIGTVTSV RVCRDNATSR SLRYGYVNYF SRADAVVALD KLNHSLVLDK PIRVMWSNRD
201: PDARRSGVGN IFVKNLSSSV DNASLQELFS KFGDVLSCKV AKNEDGTSRG YGFVQFTSQE SADEAIGNLN GSLFNDRKLH VATFIKKSER SANNDDKFTN
301: LYMKHLDDDI TEELVKLKFS QFGSIVSVKI MKRPDGSSLG FGFVSFQNPE SAIKAQSTMN GMLLGSKALY VARAQKKEER KQYLQRLHEE KRNEIMTRCN
401: ESNVYIKNIH DEVDDDALRA RFVEFGNITS AKVMRDDKGI SRGFGFVCYS TPEEAKSAVN NMRGVMFFGK PLYVAIFQRK EERKAKLQQH FAQLARMVGP
501: ANSMIPTGYP QVYFAHPSTH IPQGPPRHGF VYPPMGLSHE WRPSMFPPAP NLQQIHSPVM PNSPRHYRSN RGRMGGNMMP LPHAVHTMNY MTHPQPAKEF
601: MSLPRQRFNH PKYFSNDVMA NSLAIHQSDP VSTMNDSFSN YLASAPPAEQ KNLLGNRLYP LVERHQPELA SKITGMLLEL DNSEVVTLLC SSEMLSVKVD
701: ECVQLLQATK PKAEDHEALH PGFMLEPRPP SVNAS

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.