CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32613	Soybean	cytosol	90.3	91.41
KRH67800	Soybean	cytosol	69.9	54.75
KRG96088	Soybean	cytosol	69.29	53.93
VIT_08s0007g04380.t01	Wine grape	cytosol	65.86	51.42
PGSC0003DMT400021673	Potato	cytosol	62.22	49.04
Solyc10g085750.1.1	Tomato	nucleus	61.62	49.04
PGSC0003DMT400033802	Potato	cytosol	57.98	47.2
Solyc09g008620.1.1	Tomato	cytosol	56.16	45.95
Bra034301.1-P	Field mustard	mitochondrion	9.49	42.34
CDY72408	Canola	plastid	7.88	41.94
AT2G36660.1	Thale cress	cytosol, plastid	49.7	40.39
GSMUA_Achr9P10860_001	Banana	cytosol	53.54	37.06
CDY33264	Canola	mitochondrion, nucleus	14.55	36.0
TraesCS4A01G099500.1	Wheat	cytosol	47.07	35.74
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.67	35.7
TraesCS4D01G205700.1	Wheat	cytosol	47.07	35.68
HORVU4Hr1G059070.1	Barley	cytosol	47.07	35.63
TraesCS4B01G204800.1	Wheat	cytosol	46.67	35.48
CDY57754	Canola	nucleus	15.15	35.21
KRH52023	Soybean	cytosol, endoplasmic reticulum	42.42	33.33
KRH70673	Soybean	nucleus	43.43	33.18
KRH61326	Soybean	cytosol, endoplasmic reticulum	42.22	33.17
KRH50336	Soybean	cytosol	43.23	32.87
KRH70233	Soybean	cytosol	41.01	32.27
KRH05656	Soybean	endoplasmic reticulum, nucleus	42.22	31.96
KXG40160	Sorghum	nucleus	46.06	31.62
KRG91724	Soybean	cytosol	41.62	31.6
KRH15385	Soybean	nucleus	41.41	31.44
Zm00001d047790_P001	Maize	plastid	46.26	31.16
KRH08608	Soybean	endoplasmic reticulum	41.82	31.08
CDY30168	Canola	cytosol	31.92	29.37
CDY56198	Canola	cytosol	28.89	29.24
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	28.69	27.2
KRH36396	Soybean	endoplasmic reticulum	17.78	24.11
KRH27525	Soybean	nucleus	17.58	23.9
KRH51075	Soybean	endoplasmic reticulum	16.97	21.16
KRH71168	Soybean	nucleus	18.38	21.11
KRH61258	Soybean	nucleus	17.37	21.03
KRH02082	Soybean	nucleus	16.97	20.9
KRH05723	Soybean	nucleus	17.37	20.82
KRH20867	Soybean	nucleus	17.17	20.78
KRH11417	Soybean	nucleus	17.17	20.68
KRH19347	Soybean	mitochondrion, nucleus	16.97	20.49
KRH50251	Soybean	nucleus	17.78	20.42
KRH02581	Soybean	mitochondrion	16.77	20.1
KRH61952	Soybean	mitochondrion	17.17	20.0
KRH51956	Soybean	nucleus	16.57	19.95
KRH24702	Soybean	nucleus	16.16	19.95
KRH52613	Soybean	nucleus	17.37	19.77
KRH15315	Soybean	nucleus	16.97	19.76
KRH06218	Soybean	nucleus	16.57	19.71
KRH29709	Soybean	cytosol	15.96	19.7
KRH47641	Soybean	nucleus	16.57	19.43
KRH23136	Soybean	cytosol	15.76	18.62
KRH10201	Soybean	mitochondrion, nucleus, plastid	10.51	17.69

Protein Annotations

EntrezGene:100807057	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02008222	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G148200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1LZC6	InterPro:IPR000504
InterPro:IPR012677	EnsemblPlants:KRH19986	ProteinID:KRH19986	ProteinID:KRH19986.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP_1234
PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom
InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SUPFAM:SSF54928	TIGRFAMs:TIGR01628	UniParc:UPI000233AF49
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:26178374..26187237

Molecular Weight (calculated)

55605.3 Da

IEP (calculated)

9.911

GRAVY (calculated)

-0.430

Length

495 amino acids

Sequence
(BLAST)

001: MAVPATVAAV PASIYVGDLH PDVQEHHLFA AFVEFGSIAS VRVCRDRVTM NSLCYGYVNF RSQQDAIRAI KLRNNSYLNG KVIRVMWLHR DPNARKSGRG
101: NVFVKNLAGS IDNAGLHDLF KKYGNILSSK VVMSEDGKSK GYGFVQFEWE ESANNAIEKL NGSTVGNKQI YVGKFVRKGD RILPGYDAKY TNLYIKNLDS
201: DITEALLQEK FSSFGKIISL AISKDDNGLS KGFAFVNYEN PDDAKKAMEA MNGLQFGSKY LYVARAQKKA EREQILHRQF EEKRKEQILK YQASNLYVKN
301: IDDDVTDKEL RDLFSSCGTI TSVKVMRDDK GISKGFGFVC FSNPEEANKA VMSFNGCTFH RKPLYIAIAQ RKKERKTQLN LHYAPQQAGL DGSSTPVIPG
401: GVPPYFYHSV ASLMFQSGLL YQPLGLRSGW RANDFVPPAR SFQHSQVPIV PNFTRHQRQN RGSRMNGNLN SLGKAYSSVY IPQLQYYQAV EYSAA

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.