CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97304
KRH69036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	KRG97304	AT2G43970.1	21798944
AT4G34110.1	KRH69036	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50336	Soybean	cytosol	97.53	97.08
PGSC0003DMT400066245	Potato	extracellular	79.48	80.09
KRH15385	Soybean	nucleus	80.25	79.75
Solyc01g107870.2.1	Tomato	extracellular	79.01	79.63
KRH05656	Soybean	endoplasmic reticulum, nucleus	79.48	78.75
GSMUA_Achr9P00990_001	Banana	cytosol	75.62	75.27
CDX71223	Canola	cytosol	73.77	74.92
CDX89664	Canola	cytosol	70.99	74.92
CDY67364	Canola	nucleus	33.8	74.74
CDY62723	Canola	cytosol	71.14	74.72
GSMUA_Achr4P09890_001	Banana	cytosol	75.15	74.69
Bra034603.1-P	Field mustard	cytosol, plastid	71.3	74.64
CDX69025	Canola	nucleus, plastid	70.37	74.63
CDY54068	Canola	cytosol	75.15	74.58
CDY51957	Canola	cytosol, plastid	71.14	74.47
AT4G34110.1	Thale cress	cytosol	72.22	74.4
CDX75397	Canola	nucleus, plastid	70.68	74.35
Bra011488.1-P	Field mustard	cytosol, plastid	70.22	74.23
Bra018797.1-P	Field mustard	cytosol	74.69	74.12
CDY51045	Canola	cytosol	74.69	74.12
Bra013104.1-P	Field mustard	cytosol	70.06	73.7
GSMUA_AchrUn_...	Banana	cytosol	73.46	73.01
CDY36634	Canola	nucleus	72.99	72.88
Bra015220.1-P	Field mustard	cytosol	64.81	72.66
AT1G49760.1	Thale cress	cytosol	75.0	72.43
KRH52023	Soybean	cytosol, endoplasmic reticulum	70.37	72.38
KRH61326	Soybean	cytosol, endoplasmic reticulum	69.91	71.9
GSMUA_Achr4P20270_001	Banana	cytosol	71.14	71.7
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	67.44	71.52
Os09t0115400-01	Rice	nucleus	71.6	70.09
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	71.14	69.85
Os04t0504800-01	Rice	plasma membrane	70.83	69.65
CDY67365	Canola	plastid	31.33	69.52
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	69.91	69.48
TraesCS2A01G359000.1	Wheat	cytosol	70.83	69.02
Zm00001d025801_P005	Maize	cytosol, plastid	69.44	69.02
TraesCS2D01G358000.1	Wheat	cytosol	70.68	68.98
TraesCS5B01G159400.1	Wheat	cytosol	69.29	68.97
TraesCS2B01G378400.1	Wheat	nucleus	70.68	68.87
CDX79296	Canola	plastid	19.44	68.85
TraesCS5D01G167000.1	Wheat	nucleus, unclear	69.14	68.82
TraesCS5A01G161800.2	Wheat	nucleus	69.14	68.82
EES12460	Sorghum	plastid	70.22	68.52
TraesCS7D01G287900.1	Wheat	cytosol	67.44	68.5
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	82.25	67.73
KXG35258	Sorghum	cytosol	68.21	67.38
TraesCS7A01G288700.1	Wheat	nucleus	68.52	67.07
Zm00001d005276_P007	Maize	cytosol	67.59	66.97
Zm00001d019824_P004	Maize	cytosol	67.44	66.62
HORVU5Hr1G050560.1	Barley	plastid	69.44	64.1
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	68.36	61.87
TraesCS7B01G182800.3	Wheat	cytosol	63.58	61.04
KRG91724	Soybean	cytosol	59.72	59.36
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	57.87	57.87
KRH70233	Soybean	cytosol	53.09	54.69
KRH08608	Soybean	endoplasmic reticulum	56.17	54.65
GSMUA_Achr7P05430_001	Banana	nucleus	72.38	51.88
Bra022413.1-P	Field mustard	cytosol	33.8	49.1
CDX92325	Canola	nucleus	23.15	46.58
KRH32613	Soybean	cytosol	34.26	45.4
KRH67800	Soybean	cytosol	43.98	45.09
KRG96088	Soybean	cytosol	43.52	44.34
KRH19986	Soybean	cytosol	33.18	43.43
KRH36396	Soybean	endoplasmic reticulum	16.82	29.86
KRH27525	Soybean	nucleus	16.67	29.67
KRH10201	Soybean	mitochondrion, nucleus, plastid	12.5	27.55
KRH29709	Soybean	cytosol	16.36	26.43
KRH23136	Soybean	cytosol	16.82	26.01
KRH24702	Soybean	nucleus	16.05	25.94
KRH20867	Soybean	nucleus	15.43	24.45
KRH51075	Soybean	endoplasmic reticulum	14.97	24.43
KRH11417	Soybean	nucleus	15.43	24.33
KRH02082	Soybean	nucleus	14.81	23.88
KRH02581	Soybean	mitochondrion	15.12	23.73
KRH06218	Soybean	nucleus	15.12	23.56
KRH52613	Soybean	nucleus	15.74	23.45
KRH19347	Soybean	mitochondrion, nucleus	14.81	23.41
KRH61952	Soybean	mitochondrion	15.28	23.29
KRH47641	Soybean	nucleus	15.12	23.22
KRH61258	Soybean	nucleus	14.35	22.74
KRH71168	Soybean	nucleus	15.12	22.74
KRH05723	Soybean	nucleus	14.2	22.28
KRH51956	Soybean	nucleus	14.04	22.14
KRH50251	Soybean	nucleus	14.51	21.81
KRH15315	Soybean	nucleus	13.89	21.18

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100813735	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02000789	ncoils:Coil
EnsemblPlantsGene:GLYMA_02G103900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1JE12	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	EnsemblPlants:KRH70673	ProteinID:KRH70673	ProteinID:KRH70673.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00023BE1B1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:9863875..9869731

Molecular Weight (calculated)

70722.3 Da

IEP (calculated)

8.244

GRAVY (calculated)

-0.451

Length

648 amino acids

Sequence
(BLAST)

001: MAQVQVPPQN AIPGPNGGGA AGNQFVTTSL YVGDLDPNVT DAQLYDLFNQ LGQVVSVRVC RDLTSRRSLG YGYVNFSNPQ DAARALDVLN FTPLNNRPIR
101: IMYSHRDPSI RKSGQGNIFI KNLDRAIDHK ALHDTFSTFG NILSCKVATD SSGQSKGYGF VQFDNEESAQ KAIEKLNGML LNDKQVYVGP FLRKQEREST
201: ADKAKFNNVF VKNLSESTTD DELKNVFGEF GTITSAVVMR DGDGKSKCFG FVNFENADDA ARAVEALNGK KFDDKEWYVG KAQKKSEREN ELKQRFEQSM
301: KEAADKYQGA NLYVKNLDDS LGDDKLKELF SPFGTITSCK VMRDPNGISR GSGFVAFSTP DEASRALLEM NGKMVVSKPL YVTLAQRKED RRARLQAQFA
401: QMRPVGMPPS VGPRVPMYPP GGPGIGQQIF YAQGPPAIIP SQPGFGYQQQ LVPGMRPGAA PVPNFFVPMV QQGQQGQRPG GRRTGAVQQS QQPVPMMPQQ
501: MLPRGRVYRY PPGRGMPDVS MPGVAGGMFS VPYDVGGMPL RDASISQQIP VGALATALAN ASPEQQRTML GENLYPLVEQ LEPDNAAKVT GMLLEMDQTE
601: VLHLLESPEA LKAKVAEAMD VLRNVAQQQA GGTADQLASL SLNDNLVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.