Factsheet for PGSC0003DMT400066245

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400064931
PGSC0003DMT400075259

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34110.1	PGSC0003DMT400064931	AT2G43970.1	21798944
AT4G34110.1	PGSC0003DMT400075259	AT2G43970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107870.2.1	Tomato	extracellular	98.13	98.13
KRH70673	Soybean	nucleus	80.09	79.48
KRH50336	Soybean	cytosol	79.94	78.96
PGSC0003DMT400039842	Potato	cytosol	72.63	77.83
CDY67364	Canola	nucleus	33.75	74.06
CDY62723	Canola	cytosol	69.83	72.77
CDY51957	Canola	cytosol, plastid	69.98	72.7
Bra034603.1-P	Field mustard	cytosol, plastid	69.83	72.54
CDX89664	Canola	cytosol	69.21	72.48
CDY54068	Canola	cytosol	73.56	72.43
Bra018797.1-P	Field mustard	cytosol	73.41	72.28
CDY51045	Canola	cytosol	73.41	72.28
Bra013104.1-P	Field mustard	cytosol	69.21	72.24
CDX71223	Canola	cytosol	71.54	72.1
AT4G34110.1	Thale cress	cytosol	70.3	71.86
CDX75397	Canola	nucleus, plastid	68.27	71.27
CDX69025	Canola	nucleus, plastid	67.34	70.87
Bra011488.1-P	Field mustard	cytosol, plastid	67.5	70.8
Bra015220.1-P	Field mustard	cytosol	62.83	69.9
AT1G49760.1	Thale cress	cytosol	72.94	69.9
CDY36634	Canola	nucleus	69.83	69.18
CDX79296	Canola	plastid	19.13	67.21
CDY67365	Canola	plastid	30.48	67.12
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	79.47	64.93
PGSC0003DMT400064531	Potato	cytosol	47.43	57.33
PGSC0003DMT400012508	Potato	nucleus	10.73	55.65
Bra022413.1-P	Field mustard	cytosol	32.81	47.31
CDX92325	Canola	nucleus	22.71	45.34
PGSC0003DMT400021673	Potato	cytosol	42.61	43.63
PGSC0003DMT400033802	Potato	cytosol	40.44	42.76
PGSC0003DMT400023075	Potato	nucleus	17.42	30.85
PGSC0003DMT400014744	Potato	nucleus	17.42	30.77
PGSC0003DMT400018998	Potato	nucleus	16.95	26.08
PGSC0003DMT400013036	Potato	nucleus	15.4	24.75
PGSC0003DMT400020621	Potato	nucleus	15.09	24.49
PGSC0003DMT400066072	Potato	nucleus	15.55	24.39
PGSC0003DMT400029379	Potato	nucleus	15.09	24.25
PGSC0003DMT400012431	Potato	mitochondrion, nucleus	15.71	24.22
PGSC0003DMT400007513	Potato	mitochondrion, nucleus	14.93	23.94
PGSC0003DMT400057203	Potato	cytosol	14.93	23.82
PGSC0003DMT400058919	Potato	nucleus	15.09	23.26
PGSC0003DMT400042504	Potato	nucleus	14.93	23.24
PGSC0003DMT400066648	Potato	nucleus	14.15	21.67

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:102585145	MapMan:17.4.2.5	Gene3D:3.30.70.330	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M1CF88	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	EnsemblPlantsGene:PGSC0003DMG400025777
PGSC:PGSC0003DMG400025777	EnsemblPlants:PGSC0003DMT400066245	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI0002956CB1	RefSeq:XP_006346392.1	SEG:seg

Description

Poly(A)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025777]

Coordinates

chr1:+:84233420..84241937

Molecular Weight (calculated)

70114.8 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.415

Length

643 amino acids

Sequence
(BLAST)

001: MAQVQVQPQG ANAGGVNQFV TSLYVGDLDV NVTDSQLYDL FNHLGQVVSV RVCRDLTTQR SLGYGYVNYG NPQDAARALE VLNFTPLSGK PIRIMYSNRD
101: PTVRRSGTAN IFIKNLDKAI DHKALHDTFS AFGNILSCKV AVDSSGQSKG YGFVQYDGED AAQKAIEKLN GMLLNDKQVY VGPFVRKQER DSAVDKTRFT
201: NVFVKNLSEA TLEEDLKKAF GEFGTITSIA IMKDEDGKSR SFGFINFENA EDAARAVEAL NGHKFDNKEW FVGRAQKKSE REMELKNRYE QSAKEAVDKS
301: QGLNLYIKNL DDSISDDKLK EMFSTYGTIT SCKVMRDPSG GSKGSGFVAF SSPEEASRAL AEMNGKMIVS KPLYVALAQR KEERRARLQA QFSQMRPIGM
401: ASTVAPRMPM YPPGGPGLGQ QIFYGQPQPA MLPPQAGFGY QQQLVPGMRP GGGPMPNFFM PMVQQGQQGQ RPGGRRGGAV PLQQGQQPVP LMQQQMFPRG
501: RGYRYPPGRG LPDVGFPGVG GGMFSVPYDM GGMPVRDAGI AQPIPVGALA TALANASPTE QRTMLGENLY PLVEQLEPET AAKVTGMLLE MDQTEVLHLL
601: ESPEALKAKV AEAMDVLRNV PQQQASNAAD QLASLSLNDG LVS

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.