Factsheet for Bra018797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra032775.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G49760.1	Bra032775.1-P	AT4G14270.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51045	Canola	cytosol	100.0	100.0
AT1G49760.1	Thale cress	cytosol	92.04	89.57
Bra013104.1-P	Field mustard	cytosol	70.6	74.84
KRH70673	Soybean	nucleus	74.12	74.69
KRH50336	Soybean	cytosol	74.12	74.35
Bra034603.1-P	Field mustard	cytosol, plastid	70.14	73.99
Solyc01g107870.2.1	Tomato	extracellular	72.43	73.56
PGSC0003DMT400066245	Potato	extracellular	72.28	73.41
Bra011488.1-P	Field mustard	cytosol, plastid	68.15	72.59
Bra015220.1-P	Field mustard	cytosol	63.09	71.28
Bra039841.1-P	Field mustard	cytosol	22.66	69.48
HORVU2Hr1G087390.3	Barley	cytosol, mitochondrion, nucleus	62.63	66.94
Os09t0115400-01	Rice	nucleus	67.84	66.92
TraesCS5B01G159400.1	Wheat	cytosol	66.62	66.82
TraesCS5D01G167000.1	Wheat	nucleus, unclear	66.46	66.67
TraesCS5A01G161800.2	Wheat	nucleus	66.31	66.51
Zm00001d025801_P005	Maize	cytosol, plastid	65.85	65.95
GSMUA_Achr4P09890_001	Banana	cytosol	65.7	65.8
GSMUA_Achr9P00990_001	Banana	cytosol	65.54	65.75
Zm00001d003106_P003	Maize	extracellular, mitochondrion, plasma membrane	65.39	65.49
GSMUA_AchrUn_...	Banana	cytosol	64.78	64.88
TraesCS2A01G359000.1	Wheat	cytosol	66.0	64.81
EES12460	Sorghum	plastid	65.85	64.76
TraesCS2D01G358000.1	Wheat	cytosol	65.85	64.76
Os08t0314800-02	Rice	cytosol, nucleus, plasma membrane	65.39	64.7
TraesCS7D01G287900.1	Wheat	cytosol	63.09	64.58
GSMUA_Achr4P20270_001	Banana	cytosol	63.55	64.54
TraesCS2B01G378400.1	Wheat	nucleus	65.7	64.51
Os04t0504800-01	Rice	plasma membrane	65.08	64.49
KXG35258	Sorghum	cytosol	64.32	64.02
Zm00001d005276_P007	Maize	cytosol	63.71	63.61
Zm00001d019824_P004	Maize	cytosol	63.55	63.26
TraesCS7A01G288700.1	Wheat	nucleus	63.86	62.99
HORVU5Hr1G050560.1	Barley	plastid	66.62	61.97
Bra032172.1-P	Field mustard	cytosol	59.57	60.4
VIT_03s0063g00070.t01	Wine grape	cytosol, plastid	71.06	58.96
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	55.9	58.31
HORVU7Hr1G063970.1	Barley	cytosol, nucleus, plastid	63.86	58.24
TraesCS7B01G182800.3	Wheat	cytosol	59.11	57.19
GSMUA_Achr8P24250_001	Banana	cytosol, plastid	51.15	51.54
Bra022413.1-P	Field mustard	cytosol	35.07	51.35
Bra016371.1-P	Field mustard	plastid	46.71	51.26
Bra003915.1-P	Field mustard	cytosol	47.47	47.84
GSMUA_Achr7P05430_001	Banana	nucleus	65.85	47.57
Bra007984.1-P	Field mustard	plastid	45.02	47.12
Bra016118.1-P	Field mustard	plastid	49.31	47.08
Bra034301.1-P	Field mustard	mitochondrion	7.35	43.24
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	27.26	34.1
Bra027446.1-P	Field mustard	cytosol	13.78	28.12
Bra037217.1-P	Field mustard	nucleus	15.93	27.3
Bra039603.1-P	Field mustard	nucleus	15.16	27.2
Bra030908.1-P	Field mustard	nucleus	15.93	24.82
Bra002947.1-P	Field mustard	nucleus	14.85	24.49
Bra037962.1-P	Field mustard	nucleus	15.77	24.47
Bra030985.1-P	Field mustard	mitochondrion, nucleus	15.16	23.68
Bra019078.1-P	Field mustard	nucleus	14.85	23.54
Bra006502.1-P	Field mustard	nucleus	15.47	23.49
Bra002230.1-P	Field mustard	nucleus	15.01	23.39
Bra031774.1-P	Field mustard	nucleus	13.94	23.1
Bra010418.1-P	Field mustard	nucleus	13.02	22.49
Bra018813.1-P	Field mustard	mitochondrion, nucleus	13.32	22.31
Bra001735.1-P	Field mustard	nucleus	13.94	22.09
Bra022389.1-P	Field mustard	nucleus	14.4	22.07
Bra026387.1-P	Field mustard	nucleus	12.71	21.12
Bra037538.1-P	Field mustard	nucleus	11.79	19.11
Bra040663.1-P	Field mustard	nucleus	10.41	18.28
Bra014216.1-P	Field mustard	nucleus	11.03	12.59

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra018797	EnsemblPlants:Bra018797.1	EnsemblPlants:Bra018797.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150
GO:GO:0046686	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677	UniProt:M4DQK4	InterPro:Nucleotide-bd_a/b_plait_sf
InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102
PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk
SMART:SM00360	SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628
UniParc:UPI000253EBD7	SEG:seg	:	:	:	:

Description

AT1G49760 (E=1e-266) PAB8, PABP8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor

Coordinates

chrA06:+:1900858..1904324

Molecular Weight (calculated)

70898.5 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.479

Length

653 amino acids

Sequence
(BLAST)

001: MAQIQNANGG VAVSGAGAAA AVVGAGQQGT TSLYVGDLDQ TVTDSQLFEA FSQAGQVVSV RVCRDMTTRR SLGYGYVNYA TPQDATRALN ELNFMALNGR
101: AIRVMYSVRD PSVRKSGLGN IFIKNLDKSI DHKALHETFS AFGAILSCKV AVDPSGQSKG YGFVQYDTEE AAQRAIEQLN GMLLNDKQVY VGPFVHKQQR
201: DPSGEKVKFN NVYVKNLSES MSDEELKKVF GEFGVTTSCV IMRDGEGKSK GFGFVNFESS EDAAKAVEAL NGKTFDDKEW FVGRAQKKSE RENELKQKYE
301: QSLKEAADKS QGSNLYVKNL DESVTDEKLR EHFTSFGTIT SCKVMRDPTG VSRGSGFVAF STPEEASRAI AEMNGKMIVS KPLYVALAQR KEDRKARLQA
401: QFSQMRPVPA VGPRMPMYPP GGPPMGQQLF YGQGPPGMIP PQPGYGYQQQ LVPGMRPGGS PMPNFFMPMM QQGQQQQQQQ RPGGGGRRGG ALPQQPSPMM
501: QPQQMHPRGR MYRYPQRDVN PMPGLTPNML SVPYDVSGGG AHLRDSPAAS QPVPIGALAT SLANAAPEHQ RTMLGENLYP LVEQLEPESA AKVTGMLLEM
601: DQTEVLHLLE SPDALKAKVA EAMDVLRSVA QQQQAGGAAD QLASLSLGDN IVP

Best Arabidopsis Sequence Match ( AT1G49760.1 )
(BLAST)

001: MAQIQHQGQN ANGGVAVPGA AAAEAAAAAA GAAAAAAGAA QQGTTSLYVG DLDATVTDSQ LFEAFTQAGQ VVSVRVCRDM TTRRSLGYGY VNYATPQDAS
101: RALNELNFMA LNGRAIRVMY SVRDPSLRKS GVGNIFIKNL DKSIDHKALH ETFSAFGPIL SCKVAVDPSG QSKGYGFVQY DTDEAAQGAI DKLNGMLLND
201: KQVYVGPFVH KLQRDPSGEK VKFTNVYVKN LSESLSDEEL NKVFGEFGVT TSCVIMRDGE GKSKGFGFVN FENSDDAARA VDALNGKTFD DKEWFVGKAQ
301: KKSERETELK QKFEQSLKEA ADKSQGSNLY VKNLDESVTD DKLREHFAPF GTITSCKVMR DPSGVSRGSG FVAFSTPEEA TRAITEMNGK MIVTKPLYVA
401: LAQRKEDRKA RLQAQFSQMR PVNMPPAVGP RMQMYPPGGP PMGQQLFYGQ GPPAMIPQPG FGYQQQLVPG MRPGGSPMPN FFMPMMQQGQ QQQQQQQQQQ
501: RPGGGRRGAL PQPQQPSPMM QQQMHPRGRM YRYPQRDVNT MPGPTQNMLS VPYDVSSGGG VHHRDSPTSQ PVPIVALATR LANAAPEQQR TMLGENLYPL
601: VEQLEPESAA KVTGMLLEMD QTEVLHLLES PEALKAKVTE AMDVLRSVAQ QQAGGAADQL ASLSLGDNIV P

Arabidopsis Description

PAB8Polyadenylate-binding protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.