Factsheet for Bra032172.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006453.1-P
Bra013840.1-P
Bra019205.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23350.1	Bra006453.1-P	AT4G24840.1	21798944
AT2G23350.1	Bra013840.1-P	AT4G24840.1	21798944
AT2G23350.1	Bra019205.1-P	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38939	Canola	nucleus	99.38	99.38
AT2G23350.1	Thale cress	nucleus	86.8	84.44
Bra039195.1-P	Field mustard	cytosol, nucleus, plastid	81.21	83.55
Bra034603.1-P	Field mustard	cytosol, plastid	60.4	62.84
Bra011488.1-P	Field mustard	cytosol, plastid	59.63	62.64
Bra013104.1-P	Field mustard	cytosol	58.54	61.2
Bra018797.1-P	Field mustard	cytosol	60.4	59.57
Bra015220.1-P	Field mustard	cytosol	52.33	58.3
Bra039841.1-P	Field mustard	cytosol	17.08	51.64
Bra016371.1-P	Field mustard	plastid	45.5	49.24
Bra003915.1-P	Field mustard	cytosol	46.89	46.6
Bra016118.1-P	Field mustard	plastid	48.45	45.61
Bra007984.1-P	Field mustard	plastid	43.01	44.39
Bra034301.1-P	Field mustard	mitochondrion	7.45	43.24
Bra022413.1-P	Field mustard	cytosol	29.35	42.38
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.93	31.99
Bra027446.1-P	Field mustard	cytosol	14.91	30.0
Bra037217.1-P	Field mustard	nucleus	17.08	28.87
Bra039603.1-P	Field mustard	nucleus	16.15	28.57
Bra002947.1-P	Field mustard	nucleus	15.68	25.51
Bra031774.1-P	Field mustard	nucleus	15.37	25.13
Bra019078.1-P	Field mustard	nucleus	15.68	24.51
Bra010418.1-P	Field mustard	nucleus	14.29	24.34
Bra002230.1-P	Field mustard	nucleus	15.53	23.87
Bra018813.1-P	Field mustard	mitochondrion, nucleus	14.44	23.85
Bra006502.1-P	Field mustard	nucleus	15.84	23.72
Bra030908.1-P	Field mustard	nucleus	15.37	23.63
Bra030985.1-P	Field mustard	mitochondrion, nucleus	15.22	23.45
Bra037962.1-P	Field mustard	nucleus	15.22	23.28
Bra026387.1-P	Field mustard	nucleus	13.66	22.39
Bra001735.1-P	Field mustard	nucleus	13.98	21.84
Bra022389.1-P	Field mustard	nucleus	13.98	21.13
Bra040663.1-P	Field mustard	nucleus	11.65	20.16
Bra037538.1-P	Field mustard	nucleus	11.8	18.86
Bra014216.1-P	Field mustard	nucleus	12.27	13.81

Protein Annotations

Gene3D:1.10.1900.10	MapMan:17.4.2.5	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra032172	EnsemblPlants:Bra032172.1	EnsemblPlants:Bra032172.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	InterPro:Hud_Sxl_RNA	InterPro:IPR000504	InterPro:IPR002004	InterPro:IPR012677
UniProt:M4ETP0	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom	InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076
PFAM:PF00658	PRINTS:PR00961	PFscan:PS50102	PFscan:PS51309	PANTHER:PTHR24012	PANTHER:PTHR24012:SF349
InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360	SMART:SM00361	SMART:SM00517
SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI00025445D2	SEG:seg	:

Description

AT2G23350 (E=4e-237) PAB4, PABP4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor

Coordinates

chrA04:+:10362761..10365550

Molecular Weight (calculated)

70135.3 Da

IEP (calculated)

7.459

GRAVY (calculated)

-0.511

Length

644 amino acids

Sequence
(BLAST)

001: MAQVQAQAPS SSSPPPVTDG TVASDGVNLG AMCSLYVGDL DFNVTDSQLY DYFTEVCQVV SVRVCRDTAT NTSLGYGYVN YSNIDDAEKA LKKLNYTSLN
101: GKMIRVTYSS RDSAARRSGI GNLFIKNLDK SVDNKTLHET FSPCGSIVSC KVATDHMGQS KGYGFVQFES EDSAKSAIEK LNGKILNDKQ IFVGPFLKKE
201: ERESAADKMK FTNVYVKNLS ETTTDDELKS TFGQYGGISS AVVMRDGDGR SRCFGFVNFE NAEDAARAVL GLNGEKFDDK EWYVGKAQKK SERELELSRR
301: YEQGARETGN SFDGLNLYVK NLDDTVTDEK LRELFAEFGT ITSCKVMRDP SGASKGSGFV AFSAASEASR VLNEMNGKMV SGKPLYVSLA QRKEERRAKL
401: QAQFSQMRPA FIPGMGPRMP MFPGGAPGQQ FFYGQGPPQM IPHQAGFGYQ PQMVPGMRPG YFGPMMQPGQ QGPRPGGRRS GDGPMRHQPQ QPMPFMQPQM
501: MAGGGRGYRY PRGRNMPDGP MPGGMVPFPY DINGMPLGQP MSAGALASSL SQASPAQQRT ILGETLYPLV NKIEHENAAK VTGMLLEMDQ TEVLHLIESP
601: EALNAKVSEA LDVLRNVNQP TQGSEGKSGS PSGMMAALSI NDHL

Best Arabidopsis Sequence Match ( AT2G23350.1 )
(BLAST)

001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL

Arabidopsis Description

PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.