Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89562 | Canola | nucleus | 85.5 | 87.75 |
| CDY38939 | Canola | nucleus | 84.74 | 87.11 |
| Bra032172.1-P | Field mustard | cytosol | 84.44 | 86.8 |
| CDY67921 | Canola | nucleus | 80.06 | 82.17 |
| Bra039195.1-P | Field mustard | cytosol, nucleus, plastid | 76.44 | 80.83 |
| CDY46079 | Canola | nucleus | 76.44 | 80.45 |
| AT4G34110.1 | Thale cress | cytosol | 59.97 | 63.12 |
| AT1G49760.1 | Thale cress | cytosol | 60.88 | 60.06 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 48.64 | 48.79 |
| AT1G34140.1 | Thale cress | nucleus | 29.31 | 47.67 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 46.98 | 45.6 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 37.61 | 40.89 |
| AT3G16380.1 | Thale cress | nucleus | 29.31 | 36.13 |
| AT2G18510.1 | Thale cress | nucleus | 15.11 | 27.55 |
| AT3G14100.1 | Thale cress | nucleus | 15.56 | 24.12 |
| AT1G47490.1 | Thale cress | nucleus | 15.41 | 23.61 |
| AT1G47500.1 | Thale cress | nucleus | 15.41 | 23.5 |
| AT1G11650.2 | Thale cress | nucleus | 14.35 | 23.46 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 14.8 | 23.39 |
| AT5G19350.1 | Thale cress | cytosol | 14.95 | 23.29 |
| AT4G27000.1 | Thale cress | nucleus | 14.5 | 23.13 |
| AT5G54900.1 | Thale cress | nucleus | 13.44 | 23.0 |
| AT1G54080.2 | Thale cress | nucleus | 14.5 | 22.33 |
| AT3G19130.1 | Thale cress | nucleus | 14.2 | 21.61 |
| AT1G49600.3 | Thale cress | nucleus | 13.6 | 20.0 |
Protein Annotations
| Gene3D:1.10.1900.10 | MapMan:17.4.2.5 | Gene3D:3.30.70.330 | EntrezGene:816867 | UniProt:A0A178VSF7 | ProteinID:AAB87097.1 |
| ProteinID:AEC07446.1 | EMBL:AF360217 | ArrayExpress:AT2G23350 | EnsemblPlantsGene:AT2G23350 | RefSeq:AT2G23350 | TAIR:AT2G23350 |
| RefSeq:AT2G23350-TAIR-G | EnsemblPlants:AT2G23350.1 | TAIR:AT2G23350.1 | EMBL:AY050859 | EMBL:AY079389 | Unigene:At.25439 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006412 | GO:GO:0006417 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016032 | GO:GO:0019538 | GO:GO:0046686 | InterPro:IPR000504 | InterPro:IPR002004 | InterPro:IPR012677 |
| RefSeq:NP_179916.1 | InterPro:Nucleotide-bd_a/b_plait_sf | UniProt:O22173 | ProteinID:OAP09309.1 | Symbol:PAB4 | InterPro:PABP-dom |
| InterPro:PABP_1234 | InterPro:PABP_HYD | PFAM:PF00076 | PFAM:PF00658 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS50102 | PFscan:PS51309 | PANTHER:PTHR24012 | PANTHER:PTHR24012:SF349 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00360 | SMART:SM00361 | SMART:SM00517 | SUPFAM:SSF54928 | SUPFAM:SSF63570 |
| TIGRFAMs:TIGR01628 | UniParc:UPI00000A0BE1 | SEG:seg | : | : | : |
Description
PAB4Polyadenylate-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O22173]
Coordinates
chr2:+:9942915..9946347
Molecular Weight (calculated)
71656.7 Da
IEP (calculated)
6.851
GRAVY (calculated)
-0.508
Length
662 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQVQAPSSH SPPPPAVVND GAATASATPG IGVGGGGDGV THGALCSLYV GDLDFNVTDS QLYDYFTEVC QVVSVRVCRD AATNTSLGYG YVNYSNTDDA
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
101: EKAMQKLNYS YLNGKMIRIT YSSRDSSARR SGVGNLFVKN LDKSVDNKTL HEAFSGCGTI VSCKVATDHM GQSRGYGFVQ FDTEDSAKNA IEKLNGKVLN
201: DKQIFVGPFL RKEERESAAD KMKFTNVYVK NLSEATTDDE LKTTFGQYGS ISSAVVMRDG DGKSRCFGFV NFENPEDAAR AVEALNGKKF DDKEWYVGKA
301: QKKSERELEL SRRYEQGSSD GGNKFDGLNL YVKNLDDTVT DEKLRELFAE FGTITSCKVM RDPSGTSKGS GFVAFSAASE ASRVLNEMNG KMVGGKPLYV
401: ALAQRKEERR AKLQAQFSQM RPAFIPGVGP RMPIFTGGAP GLGQQIFYGQ GPPPIIPHQP GFGYQPQLVP GMRPAFFGGP MMQPGQQGPR PGGRRSGDGP
501: MRHQHQQPMP YMQPQMMPRG RGYRYPSGGR NMPDGPMPGG MVPVAYDMNV MPYSQPMSAG QLATSLANAT PAQQRTLLGE SLYPLVDQIE SEHAAKVTGM
601: LLEMDQTEVL HLLESPEALN AKVSEALDVL RNVNQPSSQG SEGNKSGSPS DLLASLSIND HL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.