Factsheet for AT5G54900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002947.1-P	Field mustard	nucleus	76.23	74.49
CDY17286	Canola	nucleus	76.23	72.84
AT4G27000.1	Thale cress	nucleus	76.23	71.08
CDY19874	Canola	nucleus	76.23	70.41
PGSC0003DMT400057203	Potato	cytosol	58.4	56.08
Solyc07g064510.2.1	Tomato	plastid	58.91	55.61
AT1G11650.2	Thale cress	nucleus	56.33	53.83
VIT_19s0090g00280.t01	Wine grape	nucleus	62.02	51.84
Zm00001d021149_P001	Maize	cytosol	20.16	47.27
AT1G47500.1	Thale cress	nucleus	48.84	43.55
AT5G19350.1	Thale cress	cytosol	47.55	43.29
AT3G19130.1	Thale cress	nucleus	48.58	43.22
AT1G47490.1	Thale cress	nucleus	47.8	42.82
AT1G49600.3	Thale cress	nucleus	47.8	41.11
AT1G17370.1	Thale cress	mitochondrion, nucleus	25.84	23.87
AT1G54080.2	Thale cress	nucleus	26.1	23.49
AT3G14100.1	Thale cress	nucleus	25.58	23.18
AT2G18510.1	Thale cress	nucleus	16.28	17.36
AT4G34110.1	Thale cress	cytosol	25.06	15.42
AT1G34140.1	Thale cress	nucleus	15.25	14.5
AT1G22760.1	Thale cress	nucleus, plastid	23.26	13.64
AT2G36660.1	Thale cress	cytosol, plastid	21.45	13.63
AT2G23350.1	Thale cress	nucleus	23.0	13.44
AT3G16380.1	Thale cress	nucleus	18.09	13.04
AT1G49760.1	Thale cress	cytosol	21.96	12.67
AT1G71770.1	Thale cress	cytosol, plastid	20.93	11.88

Protein Annotations

MapMan:16.9.4	Gene3D:3.30.70.330	EntrezGene:835581	ProteinID:AED96554.1	EMBL:AF324983	ArrayExpress:AT5G54900
EnsemblPlantsGene:AT5G54900	RefSeq:AT5G54900	TAIR:AT5G54900	RefSeq:AT5G54900-TAIR-G	EnsemblPlants:AT5G54900.1	TAIR:AT5G54900.1
Symbol:ATRBP45A	Unigene:At.19141	ProteinID:BAB08769.1	EMBL:BT029545	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006397	GO:GO:0008143
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_568815.1
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001170	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50102
PANTHER:PTHR43955	PANTHER:PTHR43955:SF8	UniProt:Q9FPJ8	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00000A8580	SEG:seg	:	:	:

Description

RBP45APolyadenylate-binding protein RBP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9FPJ8]

Coordinates

chr5:+:22295369..22298395

Molecular Weight (calculated)

42326.3 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.696

Length

387 amino acids

Sequence
(BLAST)

001: MQQPPSNAAG AGQIPSGQQH LWMMMQQQQQ QQQMQLSAAP LGQHQYGIGS QNPGSASDVK SLWIGDLQQW MDENYIMSVF AQSGEATSAK VIRNKLTGQS
101: EGYGFIEFVS HSVAERVLQT YNGAPMPSTE QTFRLNWAQA GAGEKRFQTE GPDHTIFVGD LAPEVTDYML SDTFKNVYGS VKGAKVVLDR TTGRSKGYGF
201: VRFADENEQM RAMTEMNGQY CSTRPMRIGP AANKNALPMQ PAMYQNTQGA NAGDNDPNNT TIFVGGLDAN VTDDELKSIF GQFGELLHVK IPPGKRCGFV
301: QYANKASAEH ALSVLNGTQL GGQSIRLSWG RSPNKQSDQA QWNGGGYYGY PPQPQGGYGY AAQPPTQDPN AYYGGYTGYG NYQQQRQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.