Factsheet for AT3G16380.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72408	Canola	plastid	14.15	81.72
Bra034301.1-P	Field mustard	mitochondrion	14.53	70.27
CDY33264	Canola	mitochondrion, nucleus	26.07	70.0
CDY30168	Canola	cytosol	69.65	69.52
CDY57754	Canola	nucleus	27.56	69.48
CDY56198	Canola	cytosol	63.13	69.33
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	63.31	65.13
VIT_09s0002g03160.t01	Wine grape	cytosol, nucleus, plastid, vacuole	40.22	45.38
AT1G34140.1	Thale cress	nucleus	28.12	37.1
GSMUA_Achr4P00840_001	Banana	cytosol	32.4	35.95
AT4G34110.1	Thale cress	cytosol	35.2	30.05
AT2G23350.1	Thale cress	nucleus	36.13	29.31
AT2G36660.1	Thale cress	cytosol, plastid	32.59	28.74
AT1G49760.1	Thale cress	cytosol	35.38	28.32
AT1G22760.1	Thale cress	nucleus, plastid	34.45	28.03
AT1G71770.1	Thale cress	cytosol, plastid	34.45	27.13
AT2G18510.1	Thale cress	nucleus	12.48	18.46
AT1G54080.2	Thale cress	nucleus	14.71	18.37
AT3G14100.1	Thale cress	nucleus	14.53	18.27
AT5G54900.1	Thale cress	nucleus	13.04	18.09
AT1G17370.1	Thale cress	mitochondrion, nucleus	13.97	17.9
AT4G27000.1	Thale cress	nucleus	13.78	17.83
AT1G11650.2	Thale cress	nucleus	13.41	17.78
AT1G47490.1	Thale cress	nucleus	13.97	17.36
AT1G47500.1	Thale cress	nucleus	13.78	17.05
AT3G19130.1	Thale cress	nucleus	13.59	16.78
AT5G19350.1	Thale cress	cytosol	12.85	16.24
AT1G49600.3	Thale cress	nucleus	13.59	16.22

Protein Annotations

MapMan:17.4.2.5	Gene3D:3.30.70.330	EntrezGene:820885	ProteinID:AAB63640.1	ProteinID:AEE75805.1	ArrayExpress:AT3G16380
EnsemblPlantsGene:AT3G16380	RefSeq:AT3G16380	TAIR:AT3G16380	RefSeq:AT3G16380-TAIR-G	EnsemblPlants:AT3G16380.1	TAIR:AT3G16380.1
ProteinID:BAB01277.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0006413	GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016071	GO:GO:0019538	InterPro:IPR000504	InterPro:IPR012677	RefSeq:NP_188259.1	InterPro:Nucleotide-bd_a/b_plait_sf
UniProt:O04319	Symbol:PAB6	PFAM:PF00076	PO:PO:0000003	PO:PO:0000037	PO:PO:0000084
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001078	PO:PO:0001185	PO:PO:0007131
PO:PO:0007611	PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PFscan:PS50102	PANTHER:PTHR24012	PANTHER:PTHR24012:SF674	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000009F2AA	SEG:seg	:	:	:

Description

PAB6Polyadenylate-binding protein 6 [Source:UniProtKB/Swiss-Prot;Acc:O04319]

Coordinates

chr3:-:5558445..5561126

Molecular Weight (calculated)

60356.4 Da

IEP (calculated)

9.967

GRAVY (calculated)

-0.462

Length

537 amino acids

Sequence
(BLAST)

001: MALVKTETQA LGNHQHSSRF GSLYVGDLSP DVTEKDLIDK FSLNVPVVSV HLCRNSVTGK SMCYAYINFD SPFSASNAMT RLNHSDLKGK AMRIMWSQRD
101: LAYRRRTRTG FANLYVKNLD SSITSSCLER MFCPFGSILS CKVVEENGQS KGFGFVQFDT EQSAVSARSA LHGSMVYGKK LFVAKFINKD ERAAMAGNQD
201: STNVYVKNLI ETVTDDCLHT LFSQYGTVSS VVVMRDGMGR SRGFGFVNFC NPENAKKAME SLCGLQLGSK KLFVGKALKK DERREMLKQK FSDNFIAKPN
301: MRWSNLYVKN LSESMNETRL REIFGCYGQI VSAKVMCHEN GRSKGFGFVC FSNCEESKQA KRYLNGFLVD GKPIVVRVAE RKEDRIKRLQ QYFQAQPRQY
401: TQAPSAPSPA QPVLSYVSSS YGCFQPFQVG TSYYYMGNQV PQMSGHQNIT TYVPAGKVPL KERRSMHLVY KHPAYPVAKR GAKQTLVFKG EVNRNLEAAT
501: CSKATTSEEN RKEERRLTLS GKLSPEVKVE ESGKQLQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.