Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88893 | Canola | cytosol, nucleus, peroxisome | 88.0 | 86.98 |
| CDX70874 | Canola | cytosol, nucleus, peroxisome | 88.0 | 86.98 |
| Bra006502.1-P | Field mustard | nucleus | 87.76 | 86.74 |
| Bra002230.1-P | Field mustard | nucleus | 85.41 | 86.63 |
| CDX92537 | Canola | nucleus | 84.71 | 85.92 |
| CDY13992 | Canola | nucleus | 83.76 | 84.96 |
| KRH29709 | Soybean | cytosol | 65.41 | 69.33 |
| Solyc11g065880.1.1 | Tomato | nucleus | 67.53 | 68.82 |
| KRH23136 | Soybean | cytosol | 67.53 | 68.5 |
| PGSC0003DMT400018998 | Potato | nucleus | 67.29 | 68.42 |
| KRH24702 | Soybean | nucleus | 64.24 | 68.08 |
| HORVU4Hr1G075700.5 | Barley | nucleus | 65.41 | 66.83 |
| Os03t0174100-02 | Rice | nucleus | 65.18 | 66.59 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 64.71 | 66.11 |
| VIT_06s0004g02040.t01 | Wine grape | nucleus | 68.71 | 65.62 |
| EER95414 | Sorghum | nucleus | 64.0 | 65.54 |
| GSMUA_Achr8P31320_001 | Banana | nucleus | 60.47 | 64.25 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 44.24 | 63.95 |
| TraesCS4B01G289600.1 | Wheat | nucleus | 64.71 | 59.91 |
| TraesCS4D01G288600.1 | Wheat | nucleus | 64.24 | 59.74 |
| AT1G11650.2 | Thale cress | nucleus | 45.65 | 47.9 |
| AT5G54900.1 | Thale cress | nucleus | 43.29 | 47.55 |
| AT4G27000.1 | Thale cress | nucleus | 44.47 | 45.54 |
| AT1G47500.1 | Thale cress | nucleus | 43.06 | 42.17 |
| AT1G47490.1 | Thale cress | nucleus | 42.82 | 42.13 |
| AT3G19130.1 | Thale cress | nucleus | 40.47 | 39.54 |
| AT1G49600.3 | Thale cress | nucleus | 39.06 | 36.89 |
| Zm00001d027869_P002 | Maize | nucleus | 51.76 | 28.83 |
| AT1G54080.2 | Thale cress | nucleus | 22.59 | 22.33 |
| AT3G14100.1 | Thale cress | nucleus | 22.35 | 22.25 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 21.18 | 21.48 |
| AT2G18510.1 | Thale cress | nucleus | 15.76 | 18.46 |
| AT4G34110.1 | Thale cress | cytosol | 24.94 | 16.85 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 21.88 | 15.27 |
| AT2G23350.1 | Thale cress | nucleus | 23.29 | 14.95 |
| AT1G34140.1 | Thale cress | nucleus | 14.12 | 14.74 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 22.82 | 14.7 |
| AT1G49760.1 | Thale cress | cytosol | 22.59 | 14.31 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 21.18 | 13.2 |
| AT3G16380.1 | Thale cress | nucleus | 16.24 | 12.85 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:832055 | UniProt:A0A178UT26 | ProteinID:AED92689.1 | ProteinID:AED92690.1 |
| EMBL:AF296837 | ArrayExpress:AT5G19350 | EnsemblPlantsGene:AT5G19350 | RefSeq:AT5G19350 | TAIR:AT5G19350 | RefSeq:AT5G19350-TAIR-G |
| EnsemblPlants:AT5G19350.1 | TAIR:AT5G19350.1 | EMBL:AY074319 | EMBL:AY114004 | Unigene:At.31302 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006950 |
| GO:GO:0008143 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010494 |
| GO:GO:0034605 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001078604.1 | RefSeq:NP_197436.1 | InterPro:Nucleotide-bd_a/b_plait_sf |
| ProteinID:OAO95871.1 | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF8 |
| UniProt:Q8VXZ9 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI00000A6EC1 |
| SEG:seg | : | : | : | : | : |
Description
RBP47B'Polyadenylate-binding protein RBP47B' [Source:UniProtKB/Swiss-Prot;Acc:Q8VXZ9]
Coordinates
chr5:+:6518777..6521483
Molecular Weight (calculated)
46599.4 Da
IEP (calculated)
5.431
GRAVY (calculated)
-0.460
Length
425 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMMHPPQPP QGSYHHPQTL EEVRTLWIGD LQYWVDENYL TSCFSQTGEL VSVKVIRNKI TGQPEGYGFI EFISHAAAER TLQTYNGTQM PGTELTFRLN
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
101: WASFGSGQKV DAGPDHSIFV GDLAPDVTDY LLQETFRVHY SSVRGAKVVT DPSTGRSKGY GFVKFAEESE RNRAMAEMNG LYCSTRPMRI SAATPKKNVG
201: VQQQYVTKAV YPVTVPSAVA APVQAYVAPP ESDVTCTTIS VANLDQNVTE EELKKAFSQL GEVIYVKIPA TKGYGYVQFK TRPSAEEAVQ RMQGQVIGQQ
301: AVRISWSKNP GQDGWVTQAD PNQWNGYYGY GQGYDAYAYG ATQDPSVYAY GGYGYPQYPQ QGEGTQDISN SAAGGVAGAE QELYDPLATP DVDKLNAAYL
401: SVHASAILGR PMWQRTSSLT SQLGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.