Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22988 | Canola | nucleus | 82.07 | 85.0 |
| CDX82310 | Canola | nucleus | 80.0 | 84.47 |
| Bra001735.1-P | Field mustard | nucleus | 80.0 | 84.47 |
| CDY18570 | Canola | nucleus | 82.76 | 82.95 |
| CDX95462 | Canola | nucleus | 82.76 | 82.95 |
| CDX92304 | Canola | nucleus | 79.08 | 81.13 |
| Bra022389.1-P | Field mustard | nucleus | 79.31 | 80.99 |
| CDX99265 | Canola | nucleus | 78.85 | 80.9 |
| Bra037538.1-P | Field mustard | nucleus | 74.25 | 80.15 |
| AT1G49600.3 | Thale cress | nucleus | 70.57 | 68.22 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 60.92 | 64.01 |
| Solyc01g108500.2.1 | Tomato | nucleus | 60.23 | 63.44 |
| PGSC0003DMT400066648 | Potato | nucleus | 60.23 | 62.38 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 43.68 | 60.9 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 43.45 | 60.58 |
| KRH50251 | Soybean | nucleus | 60.0 | 60.56 |
| KRH71168 | Soybean | nucleus | 59.77 | 60.32 |
| GSMUA_Achr10P... | Banana | nucleus | 43.45 | 60.19 |
| Solyc10g050860.1.1 | Tomato | nucleus | 58.85 | 59.81 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 42.3 | 58.79 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 45.29 | 57.6 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 45.06 | 57.31 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 45.06 | 57.31 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 31.72 | 53.28 |
| AT1G47490.1 | Thale cress | nucleus | 52.18 | 52.55 |
| AT1G47500.1 | Thale cress | nucleus | 51.72 | 51.84 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 47.13 | 50.87 |
| KXG35789 | Sorghum | nucleus | 50.57 | 50.23 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 49.66 | 49.88 |
| Zm00001d020748_P002 | Maize | plasma membrane | 49.66 | 49.88 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 48.51 | 49.76 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 16.78 | 49.66 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 43.22 | 49.6 |
| Os04t0449900-01 | Rice | plastid | 43.91 | 49.35 |
| AT5G54900.1 | Thale cress | nucleus | 43.22 | 48.58 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 44.37 | 46.28 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 46.67 | 46.03 |
| EES10898 | Sorghum | nucleus | 44.6 | 45.86 |
| AT4G27000.1 | Thale cress | nucleus | 43.68 | 45.78 |
| TraesCS2B01G335700.1 | Wheat | plastid | 43.91 | 45.48 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 43.45 | 45.32 |
| TraesCS2A01G317700.2 | Wheat | plastid | 44.14 | 45.28 |
| TraesCS2D01G315400.2 | Wheat | plastid | 44.14 | 45.28 |
| AT1G11650.2 | Thale cress | nucleus | 42.07 | 45.19 |
| EES05289 | Sorghum | plastid | 44.14 | 44.14 |
| Zm00001d050838_P001 | Maize | plastid | 42.99 | 43.49 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 41.61 | 42.39 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 43.91 | 41.89 |
| Zm00001d025551_P002 | Maize | plastid | 42.07 | 40.49 |
| AT5G19350.1 | Thale cress | cytosol | 39.54 | 40.47 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 43.91 | 40.3 |
| AT1G17370.1 | Thale cress | mitochondrion, nucleus | 25.29 | 26.25 |
| AT3G14100.1 | Thale cress | nucleus | 24.83 | 25.29 |
| AT1G54080.2 | Thale cress | nucleus | 23.91 | 24.19 |
| AT2G18510.1 | Thale cress | nucleus | 14.25 | 17.08 |
| AT4G34110.1 | Thale cress | cytosol | 22.76 | 15.74 |
| AT1G34140.1 | Thale cress | nucleus | 14.48 | 15.48 |
| AT2G23350.1 | Thale cress | nucleus | 21.61 | 14.2 |
| AT1G22760.1 | Thale cress | nucleus, plastid | 21.15 | 13.94 |
| AT1G49760.1 | Thale cress | cytosol | 21.15 | 13.71 |
| AT3G16380.1 | Thale cress | nucleus | 16.78 | 13.59 |
| AT1G71770.1 | Thale cress | cytosol, plastid | 20.92 | 13.34 |
| AT2G36660.1 | Thale cress | cytosol, plastid | 18.16 | 12.97 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | EntrezGene:821447 | UniProt:A0A178VAC7 | ProteinID:AEE76196.1 | EMBL:AK226472 |
| ArrayExpress:AT3G19130 | EnsemblPlantsGene:AT3G19130 | RefSeq:AT3G19130 | TAIR:AT3G19130 | RefSeq:AT3G19130-TAIR-G | EnsemblPlants:AT3G19130.1 |
| TAIR:AT3G19130.1 | Symbol:ATRBP47B | EMBL:AY084821 | Unigene:At.8226 | ProteinID:BAB02953.1 | EMBL:BT026489 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0006950 | GO:GO:0008143 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009628 |
| GO:GO:0009987 | GO:GO:0010494 | GO:GO:0034605 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_188544.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAP03109.1 | PFAM:PF00076 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF6 | UniProt:Q0WW84 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI000016345E | SEG:seg | : | : | : |
Description
RBP47BPolyadenylate-binding protein RBP47B [Source:UniProtKB/Swiss-Prot;Acc:Q0WW84]
Coordinates
chr3:-:6611182..6614107
Molecular Weight (calculated)
48121.5 Da
IEP (calculated)
6.558
GRAVY (calculated)
-0.787
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTNGSDST LATSGATPPN QQTPPPPQQW QQQQQQQQQW MAAMQYPPAA AMMMMQQQQM LMYPHQYVPY NQGPYQQHHP QLHQYGSYQQ HQHQQHKAID
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
101: RGSGDDVKTL WVGDLLHWMD ETYLHSCFSH TGEVSSVKVI RNKLTSQSEG YGFVEFLSRA AAEEVLQNYS GSVMPNSDQP FRINWASFST GEKRAVENGP
201: DLSVFVGDLS PDVTDVLLHE TFSDRYPSVK SAKVVIDSNT GRSKGYGFVR FGDENERSRA LTEMNGAYCS NRQMRVGIAT PKRAIANQQQ HSSQAVILAG
301: GHGSNGSMGY GSQSDGESTN ATIFVGGIDP DVIDEDLRQP FSQFGEVVSV KIPVGKGCGF VQFADRKSAE DAIESLNGTV IGKNTVRLSW GRSPNKQWRG
401: DSGQQWNGGY SRGHGYNNGG GYANHHDSNN YHGEN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.