Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 2
- nucleus 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0567900-01 | Rice | cytosol, nucleus | 62.27 | 91.12 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 97.89 | 88.97 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 97.1 | 88.25 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 97.89 | 81.36 |
| EES05289 | Sorghum | plastid | 90.24 | 78.62 |
| Zm00001d050838_P001 | Maize | plastid | 87.86 | 77.44 |
| TraesCS2A01G317700.2 | Wheat | plastid | 86.28 | 77.12 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 87.34 | 69.83 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 62.27 | 69.01 |
| GSMUA_Achr10P... | Banana | nucleus | 55.41 | 66.88 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 54.35 | 65.81 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 22.69 | 58.5 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 61.48 | 57.82 |
| Bra027446.1-P | Field mustard | cytosol | 48.81 | 57.81 |
| PGSC0003DMT400020621 | Potato | nucleus | 59.1 | 56.57 |
| KRH61258 | Soybean | nucleus | 60.42 | 55.99 |
| KRH05723 | Soybean | nucleus | 60.42 | 55.45 |
| KRH51956 | Soybean | nucleus | 58.31 | 53.77 |
| KRH15315 | Soybean | nucleus | 59.89 | 53.41 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 58.58 | 53.11 |
| CDY06734 | Canola | mitochondrion | 40.37 | 50.16 |
| Solyc04g079310.2.1 | Tomato | nucleus | 59.37 | 49.89 |
| Bra018813.1-P | Field mustard | mitochondrion, nucleus | 50.92 | 49.49 |
| Solyc01g108500.2.1 | Tomato | nucleus | 53.56 | 49.15 |
| AT1G47500.1 | Thale cress | nucleus | 55.41 | 48.39 |
| PGSC0003DMT400066648 | Potato | nucleus | 53.56 | 48.33 |
| VIT_03s0063g00850.t01 | Wine grape | nucleus | 52.77 | 48.31 |
| CDY52067 | Canola | nucleus | 53.3 | 48.21 |
| CDX95176 | Canola | nucleus | 53.03 | 47.97 |
| AT1G47490.1 | Thale cress | nucleus | 54.09 | 47.45 |
| KRH71168 | Soybean | nucleus | 53.83 | 47.33 |
| KRH50251 | Soybean | nucleus | 53.56 | 47.1 |
| CDY16528 | Canola | nucleus | 51.45 | 45.99 |
| TraesCS7A01G295700.3 | Wheat | plastid | 37.73 | 45.98 |
| CDY32840 | Canola | nucleus | 50.92 | 45.84 |
| CDY28101 | Canola | nucleus | 51.72 | 45.69 |
| CDY50959 | Canola | nucleus | 51.45 | 45.35 |
| CDY29341 | Canola | nucleus | 49.6 | 44.87 |
| Solyc10g050860.1.1 | Tomato | nucleus | 50.4 | 44.63 |
| TraesCS4A01G014200.1 | Wheat | nucleus | 48.55 | 44.23 |
| CDY22988 | Canola | nucleus | 48.81 | 44.05 |
| CDY68866 | Canola | nucleus | 48.02 | 43.86 |
| TraesCS6A01G100800.1 | Wheat | nucleus | 46.97 | 43.41 |
| CDX92304 | Canola | nucleus | 48.55 | 43.4 |
| CDX99265 | Canola | nucleus | 48.55 | 43.4 |
| TraesCS2A01G473000.1 | Wheat | nucleus | 49.87 | 43.35 |
| AT3G19130.1 | Thale cress | nucleus | 49.6 | 43.22 |
| Bra022389.1-P | Field mustard | nucleus | 48.55 | 43.19 |
| Bra040663.1-P | Field mustard | nucleus | 42.22 | 43.01 |
| CDX82310 | Canola | nucleus | 46.7 | 42.96 |
| Bra001735.1-P | Field mustard | nucleus | 46.7 | 42.96 |
| CDX95462 | Canola | nucleus | 48.55 | 42.4 |
| CDY18570 | Canola | nucleus | 48.28 | 42.17 |
| AT1G49600.3 | Thale cress | nucleus | 48.02 | 40.44 |
| TraesCS2A01G256500.1 | Wheat | nucleus | 37.73 | 40.17 |
| TraesCS2A01G221900.2 | Wheat | nucleus | 47.49 | 38.79 |
| Bra037538.1-P | Field mustard | nucleus | 41.16 | 38.71 |
| Bra014216.1-P | Field mustard | nucleus | 44.59 | 29.55 |
| TraesCS2A01G169100.1 | Wheat | nucleus | 27.44 | 24.3 |
| TraesCS7A01G252200.1 | Wheat | mitochondrion, nucleus | 27.18 | 23.04 |
| TraesCS4A01G150000.1 | Wheat | mitochondrion | 26.39 | 22.32 |
| TraesCS1A01G143500.1 | Wheat | nucleus | 15.04 | 15.49 |
| TraesCS7A01G288700.1 | Wheat | nucleus | 23.22 | 13.29 |
| TraesCS3A01G076800.1 | Wheat | mitochondrion, nucleus, plasma membrane, plastid | 19.53 | 13.26 |
| TraesCS5A01G161800.2 | Wheat | nucleus | 22.69 | 13.21 |
| TraesCS2A01G359000.1 | Wheat | cytosol | 22.96 | 13.08 |
| TraesCS4A01G099500.1 | Wheat | cytosol | 21.9 | 12.73 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G204400.1 | EnsemblPlantsGene:TraesCS6A01G204400 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR43955 |
| PANTHER:PTHR43955:SF7 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12344 | TIGR:cd12345 | TIGR:cd12346 | MapMan:16.9.4 | : | : |
Description
No Description!
Coordinates
chr6A:-:356201973..356210024
Molecular Weight (calculated)
41090.1 Da
IEP (calculated)
8.279
GRAVY (calculated)
-0.485
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQPRWVVLP YPPPPPPMVA APPPPTPQYV KHFAPQASVT PPPPSAGSGG NGGDENRTIW VGDLQYWMDE NYLHSCFGHS GEVVTIKVIR NRHSGVSEGY
101: GFVEFCSHAS AEKALQNFAG HVMPNTDRAF KLNWASYSVG EKRSELASDH SIFVGDLAID VTDDMLMELF ANKYRSVKGA KVIIDANTGR SRGYGFVRFG
201: DDIDRTHAMT EMNGVYCSTR PIRIGPATPR RTSGDSGTSP PTQSDGDSTN RTVYVGGLDP NVSEDELRKA FAKYGDVASV KIPVGKQCGF VQFVNRADAE
301: EALQGLSGST IGKQAVRLSW GRSPASKQSR GDSGHRRNGM YYGTPFYGGY GYASPVPHAN VYAAAYGAYP FYGNQQLVS
101: GFVEFCSHAS AEKALQNFAG HVMPNTDRAF KLNWASYSVG EKRSELASDH SIFVGDLAID VTDDMLMELF ANKYRSVKGA KVIIDANTGR SRGYGFVRFG
201: DDIDRTHAMT EMNGVYCSTR PIRIGPATPR RTSGDSGTSP PTQSDGDSTN RTVYVGGLDP NVSEDELRKA FAKYGDVASV KIPVGKQCGF VQFVNRADAE
301: EALQGLSGST IGKQAVRLSW GRSPASKQSR GDSGHRRNGM YYGTPFYGGY GYASPVPHAN VYAAAYGAYP FYGNQQLVS
001: MADVKVQSES ESSDSHPLVD YQSLPPYPPP HPPVEVEENQ PKTSPTPPPP HWMRYPPVLM PQMMYAPPPP MPFSPYHQYP NHHHFHHQSR GNKHQNAFNG
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
101: ENKTIWVGDL QNWMDEAYLN SAFTSAEERE IVSLKVIRNK HNGSSEGYGF VEFESHDVAD KVLQEFNGAP MPNTDQPFRL NWASFSTGEK RLENNGPDLS
201: IFVGDLAPDV SDALLHETFS EKYPSVKAAK VVLDANTGRS KGYGFVRFGD ENERTKAMTE MNGVKCSSRA MRIGPATPRK TNGYQQQGGY MPSGAFTRSE
301: GDTINTTIFV GGLDSSVTDE DLKQPFSEFG EIVSVKIPVG KGCGFVQFVN RPNAEEALEK LNGTVIGKQT VRLSWGRNPA NKQPRDKYGN QWVDPYYGGQ
401: FYNGYGYMVP QPDPRMYPAA PYYPMYGGHQ QQVS
Arabidopsis Description
RBP47C'Polyadenylate-binding protein RBP47C' [Source:UniProtKB/Swiss-Prot;Acc:Q9SX80]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.