Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH51956 | Soybean | nucleus | 92.18 | 91.73 |
| KRH05723 | Soybean | nucleus | 83.62 | 82.81 |
| KRH15315 | Soybean | nucleus | 84.11 | 80.94 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 78.48 | 76.79 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 55.99 | 73.4 |
| PGSC0003DMT400020621 | Potato | nucleus | 70.42 | 72.73 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 55.01 | 72.12 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 58.92 | 70.47 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 58.92 | 70.47 |
| GSMUA_Achr10P... | Banana | nucleus | 54.03 | 70.38 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 58.68 | 70.18 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 53.3 | 69.65 |
| Bra027446.1-P | Field mustard | cytosol | 52.32 | 66.88 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 41.56 | 65.64 |
| Solyc04g079310.2.1 | Tomato | nucleus | 71.15 | 64.52 |
| CDY06734 | Canola | mitochondrion | 47.19 | 63.28 |
| Zm00001d020748_P002 | Maize | plasma membrane | 65.53 | 61.89 |
| AT1G47490.1 | Thale cress | nucleus | 64.79 | 61.34 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 64.55 | 60.97 |
| KXG35789 | Sorghum | nucleus | 65.04 | 60.73 |
| AT1G47500.1 | Thale cress | nucleus | 64.3 | 60.6 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 55.99 | 60.42 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 62.1 | 59.91 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 58.68 | 59.55 |
| CDY52067 | Canola | nucleus | 60.64 | 59.19 |
| Os04t0449900-01 | Rice | plastid | 55.99 | 59.17 |
| KRH50251 | Soybean | nucleus | 61.86 | 58.7 |
| CDX95176 | Canola | nucleus | 59.9 | 58.47 |
| KRH71168 | Soybean | nucleus | 61.61 | 58.47 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 57.46 | 56.35 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 60.64 | 56.24 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 56.48 | 55.4 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.56 | 54.42 |
| EES10898 | Sorghum | nucleus | 56.23 | 54.37 |
| TraesCS2B01G335700.1 | Wheat | plastid | 55.75 | 54.29 |
| TraesCS2A01G317700.2 | Wheat | plastid | 56.23 | 54.25 |
| TraesCS2D01G315400.2 | Wheat | plastid | 56.23 | 54.25 |
| KRH20867 | Soybean | nucleus | 52.57 | 52.57 |
| Zm00001d050838_P001 | Maize | plastid | 55.26 | 52.56 |
| KRH02082 | Soybean | nucleus | 51.59 | 52.49 |
| EES05289 | Sorghum | plastid | 55.75 | 52.41 |
| KRH51075 | Soybean | endoplasmic reticulum | 50.86 | 52.39 |
| KRH11417 | Soybean | nucleus | 52.57 | 52.31 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 56.97 | 51.1 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 53.3 | 51.05 |
| Zm00001d025551_P002 | Maize | plastid | 54.03 | 48.89 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 55.26 | 47.68 |
| KRH23136 | Soybean | cytosol | 47.92 | 46.78 |
| KRH29709 | Soybean | cytosol | 44.99 | 45.89 |
| KRH24702 | Soybean | nucleus | 43.28 | 44.14 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 29.34 | 40.82 |
| KRH47641 | Soybean | nucleus | 26.89 | 26.07 |
| KRH06218 | Soybean | nucleus | 26.41 | 25.96 |
| KRH02581 | Soybean | mitochondrion | 25.67 | 25.42 |
| KRH61952 | Soybean | mitochondrion | 26.16 | 25.18 |
| KRH52613 | Soybean | nucleus | 26.65 | 25.06 |
| KRH19347 | Soybean | mitochondrion, nucleus | 24.94 | 24.88 |
| KRH19986 | Soybean | cytosol | 21.03 | 17.37 |
| KRH27525 | Soybean | nucleus | 15.16 | 17.03 |
| KRH36396 | Soybean | endoplasmic reticulum | 15.16 | 16.99 |
| KRH32613 | Soybean | cytosol | 20.05 | 16.77 |
| KRH70233 | Soybean | cytosol | 24.45 | 15.9 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 23.23 | 15.08 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 22.98 | 14.92 |
| KRG91724 | Soybean | cytosol | 23.72 | 14.88 |
| KRH15385 | Soybean | nucleus | 23.47 | 14.72 |
| KRH50336 | Soybean | cytosol | 23.23 | 14.59 |
| KRH08608 | Soybean | endoplasmic reticulum | 23.72 | 14.56 |
| KRH67800 | Soybean | cytosol | 22.49 | 14.56 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 22.98 | 14.37 |
| KRH70673 | Soybean | nucleus | 22.74 | 14.35 |
| KRG96088 | Soybean | cytosol | 21.52 | 13.84 |
Protein Annotations
| EntrezGene:100785454 | MapMan:16.9.4 | Gene3D:3.30.70.330 | EMBL:ACUP02002159 | EnsemblPlantsGene:GLYMA_04G037100 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | UniProt:I1JTH5 | InterPro:IPR000504 | InterPro:IPR012677 |
| EnsemblPlants:KRH61258 | ProteinID:KRH61258 | ProteinID:KRH61258.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 |
| PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI000233A6A9 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:-:2948712..2955021
Molecular Weight (calculated)
45054.5 Da
IEP (calculated)
7.114
GRAVY (calculated)
-0.595
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTSNGSDS KATEQRTPPP QPVAVPPQWM PMQYPAAAMV MQHHMMPPQH YAPPQPYMAY HQYQQQVPQA HHLGSSAENK TVWVGDLHHW MDENYLHRCF
101: ASTGEISSIK VIRNKQTGLS EGYGFVEFYS HGTADKVLQN YAGILMPNTE QPFRLNWATF STGDKRSDNV PDLSIFVGDL AADVTDSMLH ETFTNRYPSV
201: KAAKVVFDAN TGRSKGYGFV RFGDDNERSQ AMTEMNGVYC SSRPMRIGAA TPRKTSGYQQ GSQSNGTSSQ SEADSTNTTI FVGGLDPNVT AEDLKQPFSQ
301: YGEIVSVKIP VGKGCGFVQF ANRNNAEEAL QKLNGTTIGK QMVRLSWGRS PANKQFRADF GNAWSGAYYG GPVYDGYGYA LPPPYDPSIY AAAAYGAYPI
401: YGGYQQQVS
101: ASTGEISSIK VIRNKQTGLS EGYGFVEFYS HGTADKVLQN YAGILMPNTE QPFRLNWATF STGDKRSDNV PDLSIFVGDL AADVTDSMLH ETFTNRYPSV
201: KAAKVVFDAN TGRSKGYGFV RFGDDNERSQ AMTEMNGVYC SSRPMRIGAA TPRKTSGYQQ GSQSNGTSSQ SEADSTNTTI FVGGLDPNVT AEDLKQPFSQ
301: YGEIVSVKIP VGKGCGFVQF ANRNNAEEAL QKLNGTTIGK QMVRLSWGRS PANKQFRADF GNAWSGAYYG GPVYDGYGYA LPPPYDPSIY AAAAYGAYPI
401: YGGYQQQVS
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.