CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96088	Soybean	cytosol	94.62	94.03
VIT_08s0007g04380.t01	Wine grape	cytosol	72.15	71.92
KRH32613	Soybean	cytosol	54.75	70.76
KRH19986	Soybean	cytosol	54.75	69.9
Solyc10g085750.1.1	Tomato	nucleus	66.61	67.68
PGSC0003DMT400021673	Potato	cytosol	66.77	67.2
PGSC0003DMT400033802	Potato	cytosol	59.81	62.17
Solyc09g008620.1.1	Tomato	cytosol	57.75	60.33
AT2G36660.1	Thale cress	cytosol, plastid	51.11	53.04
GSMUA_Achr9P10860_001	Banana	cytosol	59.49	52.59
Os03t0278500-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	45.73	44.67
KRH61326	Soybean	cytosol, endoplasmic reticulum	44.46	44.6
TraesCS4B01G204800.1	Wheat	cytosol	45.89	44.55
TraesCS4A01G099500.1	Wheat	cytosol	45.73	44.33
KRH52023	Soybean	cytosol, endoplasmic reticulum	44.15	44.29
TraesCS4D01G205700.1	Wheat	cytosol	45.57	44.1
KRH70673	Soybean	nucleus	45.09	43.98
HORVU4Hr1G059070.1	Barley	cytosol	45.25	43.73
KRH50336	Soybean	cytosol	44.78	43.47
Bra034301.1-P	Field mustard	mitochondrion	7.59	43.24
CDY72408	Canola	plastid	6.33	43.01
KRH15385	Soybean	nucleus	43.67	42.33
KRH05656	Soybean	endoplasmic reticulum, nucleus	43.51	42.05
KRG91724	Soybean	cytosol	42.25	40.95
KXG40160	Sorghum	nucleus	45.41	39.81
KRH70233	Soybean	cytosol	38.77	38.95
KRH08608	Soybean	endoplasmic reticulum	40.98	38.89
Zm00001d047790_P001	Maize	plastid	44.94	38.64
CDY33264	Canola	mitochondrion, nucleus	11.71	37.0
CDY57754	Canola	nucleus	12.18	36.15
CDY30168	Canola	cytosol	27.69	32.53
CDY56198	Canola	cytosol	25.0	32.31
Bra027167.1-P	Field mustard	cytosol, nucleus, peroxisome, plastid	25.16	30.46
KRH27525	Soybean	nucleus	14.08	24.45
KRH36396	Soybean	endoplasmic reticulum	14.08	24.38
KRH02082	Soybean	nucleus	15.03	23.63
KRH10201	Soybean	mitochondrion, nucleus, plastid	10.92	23.47
KRH51075	Soybean	endoplasmic reticulum	14.72	23.43
KRH20867	Soybean	nucleus	14.87	22.98
KRH23136	Soybean	cytosol	15.19	22.91
KRH11417	Soybean	nucleus	14.72	22.63
KRH05723	Soybean	nucleus	14.72	22.52
KRH61258	Soybean	nucleus	14.56	22.49
KRH71168	Soybean	nucleus	15.19	22.27
KRH19347	Soybean	mitochondrion, nucleus	14.24	21.95
KRH50251	Soybean	nucleus	14.87	21.81
KRH24702	Soybean	nucleus	13.77	21.7
KRH29709	Soybean	cytosol	13.77	21.7
KRH51956	Soybean	nucleus	14.08	21.65
KRH15315	Soybean	nucleus	14.56	21.65
KRH02581	Soybean	mitochondrion	14.08	21.55
KRH61952	Soybean	mitochondrion	14.08	20.94
KRH47641	Soybean	nucleus	13.92	20.85
KRH52613	Soybean	nucleus	14.08	20.46
KRH06218	Soybean	nucleus	13.45	20.43

Protein Annotations

Gene3D:1.10.1900.10	EntrezGene:100804671	MapMan:17.4.2.5	Gene3D:3.30.70.330	EMBL:ACUP02002082	ncoils:Coil
EnsemblPlantsGene:GLYMA_03G188500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	UniProt:I1JPU1	InterPro:IPR000504	InterPro:IPR002004
InterPro:IPR012677	EnsemblPlants:KRH67800	ProteinID:KRH67800	ProteinID:KRH67800.1	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:PABP-dom
InterPro:PABP_1234	InterPro:PABP_HYD	PFAM:PF00076	PFAM:PF00658	PFscan:PS50102	PFscan:PS51309
PANTHER:PTHR24012	PANTHER:PTHR24012:SF455	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	SMART:SM00360
SMART:SM00361	SMART:SM00517	SUPFAM:SSF54928	SUPFAM:SSF63570	TIGRFAMs:TIGR01628	UniParc:UPI000233949B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:39957113..39961842

Molecular Weight (calculated)

69186.4 Da

IEP (calculated)

9.551

GRAVY (calculated)

-0.439

Length

632 amino acids

Sequence
(BLAST)

001: MAVPPSVAAA PASLYVGDLH PNVSDNHLVD AFSDFESLAS VRVCKDSSTG KSLCYGYVNF VSPQDAIRAI ELKNNSTLNG KAMRVMWSRR DPDARKNAIG
101: NLFVKNLPES IDNAGLQDMF KKYGNILSSK VVMSEDGKSK GYGFVQFESE ESSNVAIEKL NGSTVGDKQL YVGKFVKKSD RILPGPDARY TNLYMKNLDL
201: DVSEATLQEK FSSFGKIVSL VIAKDNIGMS KGFGFVNYDN PDDAKRAMEA MNGSKLGSKI LYVARAQKKA EREQILHHQF EEKRKEQILK YKGSNIYVKN
301: IDDHVSDEEL RDHFSACGII TSAKIMRDDK GISKGFGFVC FSTPEEANKA VNTFHGFMFH GKPLYVALAQ RKEDRKAQLQ LQYAQQVAGL SGPSTAIIPG
401: GYPPYYYAAT GVISHVPPRA GLMYQHLPMR PGWGANGFAL PARSFQQSPV PAVSNNTRQH RQNRGRLNGN PIAQGNTHSV TYLPQAQQIS QPVISSSTQQ
501: RTGQAKYLPS GRQRDMEKGS GSSSSGSNSG RGSQGSEMLH SMLAGAAPEQ QKEILGEHLY MLVHKLKPTL AAKITGMLLE MDNGELLLLL ESPESLSAKV
601: EEAVQVLKNS KTKVSGQDVL HSNFLSAEVA VN

Best Arabidopsis Sequence Match ( AT2G36660.1 )
(BLAST)

001: MATVHAALHA ADASSSGSSS PVTASLYVGD LHPSVTEGIL YDAFAEFKSL TSVRLCKDAS SGRSLCYGYA NFLSRQDANL AIEKKNNSLL NGKMIRVMWS
101: VRAPDARRNG VGNVFVKNLP ESVTNAVLQD MFKKFGNIVS CKVATLEDGK SRGYGFVQFE QEDAAHAAIQ TLNSTIVADK EIYVGKFMKK TDRVKPEEKY
201: TNLYMKNLDA DVSEDLLREK FAEFGKIVSL AIAKDENRLC RGYAFVNFDN PEDARRAAET VNGTKFGSKC LYVGRAQKKA EREQLLREQF KEKHEEQKMI
301: AKVSNIYVKN VNVAVTEEEL RKHFSQCGTI TSTKLMCDEK GKSKGFGFVC FSTPEEAIDA VKTFHGQMFH GKPLYVAIAQ KKEDRKMQLQ VQFGNRVEAR
401: KSSSSASVNP GTYAPLYYTN THPGMVYQSY PLMWKSANMI GSSYPNSEAV TYPPMVANAP SKNRQNRIGK LDRNAVSYVP NVYQSTQMLP LSRDFSKQQH
501: SRTYGRGKEM KKSIQQRQSE TVGMEMQLLG ELLHPLVEKL EPQLANKITG MLLEMDKSEL LLLLKSPEDL AVRVDEAFEV LKSSKTNLTA PNTHRSDYLA
601: SGIAGVSIK

Arabidopsis Description

PAB7Polyadenylate-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQA8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.