Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH61258 | Soybean | nucleus | 91.73 | 92.18 |
| KRH05723 | Soybean | nucleus | 81.51 | 81.11 |
| KRH15315 | Soybean | nucleus | 82.0 | 79.29 |
| VIT_18s0001g11080.t01 | Wine grape | nucleus | 76.64 | 75.36 |
| PGSC0003DMT400020621 | Potato | nucleus | 68.86 | 71.46 |
| GSMUA_Achr9P15210_001 | Banana | nucleus | 53.77 | 70.83 |
| GSMUA_Achr3P06840_001 | Banana | nucleus | 53.04 | 69.87 |
| GSMUA_Achr10P... | Banana | nucleus | 52.31 | 68.47 |
| TraesCS5A01G243500.1 | Wheat | nucleus | 56.93 | 68.42 |
| TraesCS5B01G241400.1 | Wheat | nucleus | 56.93 | 68.42 |
| TraesCS5D01G250100.1 | Wheat | nucleus | 56.69 | 68.13 |
| GSMUA_Achr6P10190_001 | Banana | nucleus | 51.34 | 67.41 |
| Bra027446.1-P | Field mustard | cytosol | 51.09 | 65.62 |
| Solyc04g079310.2.1 | Tomato | nucleus | 69.34 | 63.19 |
| Os02t0567900-01 | Rice | cytosol, nucleus | 38.69 | 61.39 |
| CDY06734 | Canola | mitochondrion | 45.5 | 61.31 |
| AT1G47490.1 | Thale cress | nucleus | 63.02 | 59.95 |
| HORVU5Hr1G069180.3 | Barley | nucleus, peroxisome, plastid | 62.53 | 59.35 |
| AT1G47500.1 | Thale cress | nucleus | 62.53 | 59.22 |
| Zm00001d020748_P002 | Maize | plasma membrane | 62.29 | 59.12 |
| GSMUA_Achr3P01720_001 | Banana | mitochondrion | 57.66 | 58.81 |
| CDY52067 | Canola | nucleus | 59.85 | 58.71 |
| KXG35789 | Sorghum | nucleus | 62.53 | 58.68 |
| TraesCS6A01G204400.1 | Wheat | mitochondrion | 53.77 | 58.31 |
| CDX95176 | Canola | nucleus | 59.12 | 58.0 |
| Zm00001d005912_P001 | Maize | cytosol, nucleus, peroxisome, plastid | 59.37 | 57.55 |
| Os04t0449900-01 | Rice | plastid | 54.01 | 57.36 |
| KRH50251 | Soybean | nucleus | 59.37 | 56.61 |
| KRH71168 | Soybean | nucleus | 59.12 | 56.38 |
| GSMUA_Achr6P09470_001 | Banana | nucleus | 19.95 | 55.78 |
| Os09t0462700-01 | Rice | mitochondrion, nucleus, plastid | 58.64 | 54.65 |
| HORVU6Hr1G048390.1 | Barley | cytoskeleton, nucleus, peroxisome | 55.23 | 54.44 |
| TraesCS6D01G184600.1 | Wheat | cytosol, nucleus, plastid | 54.26 | 53.48 |
| TraesCS2B01G335700.1 | Wheat | plastid | 54.01 | 52.86 |
| EES10898 | Sorghum | nucleus | 54.26 | 52.72 |
| TraesCS2A01G317700.2 | Wheat | plastid | 54.01 | 52.36 |
| TraesCS2D01G315400.2 | Wheat | plastid | 54.01 | 52.36 |
| EES05289 | Sorghum | plastid | 53.77 | 50.8 |
| Zm00001d050838_P001 | Maize | plastid | 53.04 | 50.7 |
| KRH02082 | Soybean | nucleus | 48.91 | 50.0 |
| KRH20867 | Soybean | nucleus | 49.63 | 49.88 |
| KRH51075 | Soybean | endoplasmic reticulum | 48.18 | 49.87 |
| KRH11417 | Soybean | nucleus | 49.63 | 49.63 |
| HORVU2Hr1G078910.4 | Barley | mitochondrion, nucleus | 51.34 | 49.41 |
| TraesCS6B01G228100.1 | Wheat | endoplasmic reticulum, plastid, vacuole | 54.74 | 49.34 |
| Zm00001d025551_P002 | Maize | plastid | 52.07 | 47.35 |
| Zm00001d016897_P002 | Maize | endoplasmic reticulum, nucleus, peroxisome, plastid | 53.53 | 46.41 |
| KRH23136 | Soybean | cytosol | 46.47 | 45.58 |
| KRH29709 | Soybean | cytosol | 44.28 | 45.39 |
| KRH24702 | Soybean | nucleus | 42.82 | 43.89 |
| KRH10201 | Soybean | mitochondrion, nucleus, plastid | 27.98 | 39.12 |
| KRH47641 | Soybean | nucleus | 26.28 | 25.59 |
| KRH06218 | Soybean | nucleus | 25.79 | 25.48 |
| KRH02581 | Soybean | mitochondrion | 25.3 | 25.18 |
| KRH52613 | Soybean | nucleus | 26.52 | 25.06 |
| KRH61952 | Soybean | mitochondrion | 25.79 | 24.94 |
| KRH19347 | Soybean | mitochondrion, nucleus | 24.57 | 24.63 |
| KRH27525 | Soybean | nucleus | 15.33 | 17.31 |
| KRH36396 | Soybean | endoplasmic reticulum | 15.33 | 17.26 |
| KRH19986 | Soybean | cytosol | 19.95 | 16.57 |
| KRH32613 | Soybean | cytosol | 19.22 | 16.16 |
| KRH70233 | Soybean | cytosol | 23.36 | 15.26 |
| KRH61326 | Soybean | cytosol, endoplasmic reticulum | 22.87 | 14.92 |
| KRH52023 | Soybean | cytosol, endoplasmic reticulum | 22.63 | 14.76 |
| KRH15385 | Soybean | nucleus | 22.87 | 14.42 |
| KRG91724 | Soybean | cytosol | 22.87 | 14.42 |
| KRH50336 | Soybean | cytosol | 22.63 | 14.29 |
| KRH08608 | Soybean | endoplasmic reticulum | 22.87 | 14.11 |
| KRH67800 | Soybean | cytosol | 21.65 | 14.08 |
| KRH05656 | Soybean | endoplasmic reticulum, nucleus | 22.38 | 14.07 |
| KRH70673 | Soybean | nucleus | 22.14 | 14.04 |
| KRG96088 | Soybean | cytosol | 20.68 | 13.36 |
Protein Annotations
| MapMan:16.9.4 | Gene3D:3.30.70.330 | UniProt:A0A0R0JJF7 | EMBL:ACUP02003401 | EMBL:ACUP02003402 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_06G037600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH51956 | ProteinID:KRH51956 | ProteinID:KRH51956.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR43955 | PANTHER:PTHR43955:SF5 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI0006ED874C | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:2880232..2886648
Molecular Weight (calculated)
45184.5 Da
IEP (calculated)
6.718
GRAVY (calculated)
-0.632
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPTSNGSDS QATEQRTPPP QWMPMQYPAA AMVMQHHMMP PQHYAPPPPQ PYMAYHHYQQ QLPHALHAHH QGSSAENKTV WVGDLHHWMD ENYLHRCFAS
101: NGEISSIKVI RNKQTGLSEG YGFVEFYSHG TAEKVLQNYA GILMPNTEQP FRLNWATFGT GDKRSDNVPD LSIFVGDLAA DVTDSMLHET FSNRYPSVKA
201: AKVVFDANTG RSKGYGFVRF GDDDERSQAM TEMNGVYCSS RPMRIGAATP RKTSGYQQGS QSNGISSQSE ADSTNTTIFV GGLDSNVTAE DLKQPFSQYG
301: EIVSVKIPVG KGCGCTICNS TTSEANNAEE ALQKLNGTTI GKQMVRLSWG RNPANKQQFR ADFGNAWSGA YYGGPVYDGY GYALPPSHDP SIYAAAYGAY
401: PIYGGHQQQV S
101: NGEISSIKVI RNKQTGLSEG YGFVEFYSHG TAEKVLQNYA GILMPNTEQP FRLNWATFGT GDKRSDNVPD LSIFVGDLAA DVTDSMLHET FSNRYPSVKA
201: AKVVFDANTG RSKGYGFVRF GDDDERSQAM TEMNGVYCSS RPMRIGAATP RKTSGYQQGS QSNGISSQSE ADSTNTTIFV GGLDSNVTAE DLKQPFSQYG
301: EIVSVKIPVG KGCGCTICNS TTSEANNAEE ALQKLNGTTI GKQMVRLSWG RNPANKQQFR ADFGNAWSGA YYGGPVYDGY GYALPPSHDP SIYAAAYGAY
401: PIYGGHQQQV S
001: MADVKIQSES ESSDSHPVVD NQPPPPPPPP QQPAKEEENQ PKTSPTPPPH WMRYPPTVII PHQMMYAPPP FPPYHQYPNH HHLHHQSRGN KHQNAFNGEN
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
101: KTIWVGDLHH WMDEAYLNSS FASGDEREIV SVKVIRNKNN GLSEGYGFVE FESHDVADKV LREFNGTTMP NTDQPFRLNW ASFSTGEKRL ENNGPDLSIF
201: VGDLSPDVSD NLLHETFSEK YPSVKAAKVV LDANTGRSKG YGFVRFGDEN ERTKAMTEMN GVKCSSRAMR IGPATPRKTN GYQQQGGYMP NGTLTRPEGD
301: IMNTTIFVGG LDSSVTDEDL KQPFNEFGEI VSVKIPVGKG CGFVQFVNRP NAEEALEKLN GTVIGKQTVR LSWGRNPANK QPRDKYGNQW VDPYYGGQFY
401: NGYGYMVPQP DPRMYPAAPY YPMYGGHQQQ VS
Arabidopsis Description
RBP47CPolyadenylate-binding protein RBP47C [Source:UniProtKB/Swiss-Prot;Acc:Q9SX79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.